PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g071420.1 | ||||||||
Common Name | MTR_3g071420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 186aa MW: 20570.6 Da PI: 7.7207 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126 | 1.8e-39 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+l+r+C++dC +apyf +++ kkfa vhk+FGasnv+k+l ++pe++red+++sl+yeAear+rdPvyG++g i lq+++++l+++l Medtr3g071420.1 14 SCAACKLLKRRCTPDCLFAPYFHSNECKKFAKVHKVFGASNVSKILIEVPEKQREDTVNSLAYEAEARLRDPVYGCIGSIAMLQRKMMELQHDL 107 6********************************************************************************************* PP DUF260 95 allkee 100 a +ke+ Medtr3g071420.1 108 AIAKER 113 *99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.142 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-39 | 14 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MKGIKGYEPR SSSSCAACKL LKRRCTPDCL FAPYFHSNEC KKFAKVHKVF GASNVSKILI 60 EVPEKQREDT VNSLAYEAEA RLRDPVYGCI GSIAMLQRKM MELQHDLAIA KERLARCRAV 120 AAAATITTTT APSVIDSLHS DVTLPPFPEF STSDDLNDIF CHGSSSQFLG RNETVDDFNQ 180 IPYIF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-43 | 9 | 116 | 6 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-43 | 9 | 116 | 6 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g071420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR378661 | 0.0 | CR378661.1 M.truncatula DNA sequence from clone XX-10B15, complete sequence. | |||
GenBank | CR937029 | 0.0 | CR937029.1 M.truncatula DNA sequence from clone MTH2-105B15 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003600955.1 | 1e-137 | LOB domain-containing protein 21 | ||||
Swissprot | Q9SRL8 | 1e-60 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | G7JBW6 | 1e-136 | G7JBW6_MEDTR; Lateral organ boundaries (LOB) domain protein | ||||
STRING | AES71206 | 1e-136 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5944 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 1e-62 | LOB domain-containing protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g071420.1 |
Entrez Gene | 11406765 |
Publications ? help Back to Top | |||
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