PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g067870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 169aa MW: 19623.7 Da PI: 9.7224 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.1 | 6.3e-15 | 85 | 127 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +++sn qvtfskRr g++KKA+ ++ C a a+iifs k Medtr3g067870.1 85 LSSESNLQVTFSKRRSGLFKKASKFCTRCRAYLALIIFSLGEK 127 6899**********************************97665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PRINTS | PR00404 | 7.9E-6 | 77 | 97 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.1E-6 | 83 | 134 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.988 | 83 | 123 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.29E-12 | 85 | 143 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.4E-15 | 87 | 128 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.9E-6 | 97 | 112 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.9E-6 | 112 | 133 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MEKQEVGKNN DEMQNSEGEN HPMVNVSIVF MSFKYQFIYR EKKEQLHVEF VKLVRQLDMK 60 QNWLSLFQRF FSMSSASCIR VSKALSSESN LQVTFSKRRS GLFKKASKFC TRCRAYLALI 120 IFSLGEKVQP QNNGIMQFIE AYCSAKVHKL NALLTHERCI GHREEPLE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g067870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT573052 | 1e-44 | CT573052.2 Medicago truncatula chromosome 5 clone mth2-60f21, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A072UZY9 | 4e-87 | A0A072UZY9_MEDTR; MADS-box transcription factor family protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-15 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g067870.1 |