PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g062440.1 | ||||||||
Common Name | MTR_3g062440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 259aa MW: 28570.8 Da PI: 8.4628 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3e-17 | 114 | 163 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +grW +eIrd + + rkr +lg+f t++eAa+ ++aa+ k++g Medtr3g062440.1 114 IFRGVRKRP-SGRWISEIRDpF-Q---RKRLWLGTFNTEKEAAAVYDAAAAKIYG 163 69*******.7*********55.3...5**********99***********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 5.1E-55 | 1 | 258 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
SuperFamily | SSF54171 | 5.36E-18 | 113 | 173 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.87E-19 | 113 | 174 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-24 | 114 | 173 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-29 | 114 | 178 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.048 | 114 | 172 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.0E-10 | 114 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-7 | 115 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-7 | 137 | 153 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MTVQSTLKLQ NPSSSNFEPD PSCKTTTKTK PNNKKLLRVI FTDHNATDSE SSGDDETPRR 60 VKKEITNITM QFPSLTDSQA TSPSSSSCSI NPTHLNKPRK RPTKNSGGSN RRSIFRGVRK 120 RPSGRWISEI RDPFQRKRLW LGTFNTEKEA AAVYDAAAAK IYGPKVAAVN FPNDASDKKS 180 VKGSPEIFSG DGFASPTSVL PFCDGETPFD GLRYGAVDAF GFDIDAPLNL TDVNFVPFEK 240 EKEEFGEFDL DEFLTWPS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.14254 | 0.0 | root| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g062440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU468280 | 0.0 | CU468280.5 M.truncatula DNA sequence from clone MTH2-97H11 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003600540.1 | 0.0 | pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | G7IV40 | 0.0 | G7IV40_MEDTR; Integrase-type DNA-binding superfamily protein | ||||
STRING | AES70791 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5585 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 5e-18 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g062440.1 |
Entrez Gene | 11438062 |
Publications ? help Back to Top | |||
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