PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr3g061290.1 | ||||||||
Common Name | MTR_140s0014, MTR_3g061290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 204aa MW: 23820.2 Da PI: 9.9222 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.1 | 5.1e-16 | 19 | 100 | 11 | 96 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++++rl +p kf+++hg s + ++ ++g +W+v+ +k +g+++++kGWk F + L g vvF+++g+s+f v+ Medtr3g061290.1 19 SNLQRLKIPHKFTKKHGVG--LSNPVLIKPPDGTKWKVYW--KKIDGEIWFEKGWKYFTENYSLGHGSLVVFEYKGTSKFDVVILG 100 3457899*********644..55569999***********..**********************************9999666654 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.689 | 9 | 102 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.33E-21 | 10 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.5E-21 | 11 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.41E-14 | 11 | 99 | No hit | No description |
SMART | SM01019 | 2.8E-15 | 12 | 102 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-13 | 19 | 100 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 204 aa Download sequence Send to blast |
MARRNATFPI HFFKIILQSN LQRLKIPHKF TKKHGVGLSN PVLIKPPDGT KWKVYWKKID 60 GEIWFEKGWK YFTENYSLGH GSLVVFEYKG TSKFDVVILG RNAVEIDYDT SCDTDDENDN 120 VGHSDDESVE ILDEWPNQKS TGKRSPLFSP RPYKKVRGEI GKRERTCREI GEKFKTSPVW 180 LQRERGKRDQ NMWDPWLFLV SPK* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr3g061290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CT009511 | 0.0 | CT009511.9 M.truncatula DNA sequence from clone MTH2-69I7 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024634637.1 | 1e-111 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | G8A300 | 1e-148 | G8A300_MEDTR; Plant-specific B3-DNA-binding domain protein | ||||
STRING | AES70698 | 1e-149 | (Medicago truncatula) | ||||
STRING | AES85838 | 1e-149 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18990.1 | 6e-21 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr3g061290.1 |
Entrez Gene | 11446527 |
Publications ? help Back to Top | |||
---|---|---|---|
|