PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g060200.4
Common NameMTR_3g060200
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 392aa    MW: 43021.2 Da    PI: 4.7564
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g060200.4genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.41.1e-145086135
             GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C++C   +  Tpl+R+gp g+ktLCnaCG+ ++kk++
  Medtr3g060200.4 50 CQHCVDNEnnTPLMRHGPAGEKTLCNACGIVWAKKRK 86
                     ****777777************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-104497IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.71E-94592No hitNo description
Gene3DG3DSA:3.30.50.103.1E-134891IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.42E-134996No hitNo description
PfamPF003202.2E-125086IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MKRIRRDTSM MRQKNRQFKS LKQIPDFSKC DSTLSAGRDS SRNPTSLRRC QHCVDNENNT  60
PLMRHGPAGE KTLCNACGIV WAKKRKLRDL SKGRVDLSVE QSDLDALIDV NVVEGELPAI  120
QNEQNPLVDV NITYFEGELS VIQNEQVISD DHSKAVAGKG SNNTSNPCDE GISEDPSKTI  180
TPKGSNNHTL NPCDEDPLID VNITVHDGKL PVIQNEQVIR EDPSKAIVGE RSYNHGLHLC  240
DEDLLIDVNI TVFDGKLPVI QNEHGISEDP SKAIVGERAY NHALNLCDEG ISEDPSRALG  300
VEGSNNHALS PCEDALIDVN VVEGELPAIQ KEQGIAEDPS KGIIVELEGS STHALNPCDK  360
VVLNFFFFYV QFGVYVHLFS GIDKTKASMN C*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g060200.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU8965483e-93CU896548.1 M.truncatula DNA sequence from clone MTH2-36A5 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600346.20.0uncharacterized protein LOC11445335 isoform X1
RefseqXP_024635989.10.0uncharacterized protein LOC11445335 isoform X1
TrEMBLA0A072UWT50.0A0A072UWT5_MEDTR; GATA type zinc finger transcription factor family protein
STRINGAES705971e-153(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.27e-16ZIM-LIKE 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]