PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g056750.1 | ||||||||
Common Name | MTR_024s0001, MTR_3g056750 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 99aa MW: 11457.1 Da PI: 9.5391 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44 | 5.7e-14 | 34 | 80 | 2 | 51 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaark 51 +y+GVr k + r+ +eI d +++n +++l +++tae+Aa+a++a Medtr3g056750.1 34 RYRGVRKTK-NSRYNVEIADpWKKN---GYVWLCTYDTAEQAARAYDATTI 80 59****888.8*********88766...5******************9755 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 13.933 | 34 | 93 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-15 | 34 | 81 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-11 | 34 | 84 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.17E-13 | 34 | 77 | No hit | No description |
Pfam | PF00847 | 1.6E-10 | 34 | 82 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-5 | 34 | 94 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence Send to blast |
MEESTYETKP NPIAKPSCKM KFKQVQNKIP KEIRYRGVRK TKNSRYNVEI ADPWKKNGYV 60 WLCTYDTAEQ AARAYDATTI SYINLCFFPK EYELASAS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g056750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013454280.1 | 6e-13 | ethylene-responsive transcription factor 3 | ||||
TrEMBL | G7ZVC6 | 1e-66 | G7ZVC6_MEDTR; Ethylene response factor | ||||
STRING | AES83164 | 2e-67 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 8e-15 | ethylene responsive element binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g056750.1 |
Entrez Gene | 25489084 |
Publications ? help Back to Top | |||
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