PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g056110.1
Common NameMTR_3g056110
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 543aa    MW: 61852.6 Da    PI: 4.9039
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g056110.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS437.11.3e-1331725421374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l+e L++cA+av+++d e +++++++l++++s +g+p++Rl ay++eAL +++a+s+s++yk+l++se +     e l+++++++e++P++kf+
  Medtr3g056110.1 172 LKEMLYTCAKAVDENDIETIEWMVTELRKIVSVSGSPIERLGAYMLEALVSKIASSGSTIYKSLKCSEPT---GNELLSYMHVLYEICPYFKFG 262
                      5789*****************************************************************9...99******************* PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++ aN aI ea+++e++vHiiDf+i+qG+QW++L+qaLa Rp+gpp++RiTg++++ s+  +   +  +ge+L  +A++++vpfef++ v    
  Medtr3g056110.1 263 YMSANGAIAEAMKEENEVHIIDFQIGQGTQWVSLIQALARRPGGPPKIRITGIDDSYSSnvRGGGVDIVGEKLLTLAQSCHVPFEFHA-VRVYP 355
                      *******************************************************7776789999***********************.68889 PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      ++++le+++++p+Ea+aVn++++lh+++desv+++++rd++L+l k++sPkvv++veqe ++n+++Fl+rfle+++yysa+++s+++ lpr+++
  Medtr3g056110.1 356 SEVRLEDFELRPNEAVAVNFAIMLHHVPDESVNIHNHRDRLLRLAKHMSPKVVTLVEQEFNTNNAPFLQRFLETMNYYSAVYESIDVVLPRDHK 449
                      9********************************************************************************************* PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      eri+vE+++l+re+vn+vaceg+er+erhe l+kWr+r+++aGF+p+pls+++++++k ll+ + ++ y++ee++g+l+lgW+++ L++ +aWr
  Medtr3g056110.1 450 ERINVEQHCLAREVVNLVACEGEERVERHELLSKWRMRFTMAGFTPYPLSSFINSSIKNLLESYRGH-YTLEERDGALFLGWMNQDLIASCAWR 542
                      *****************************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.057146523IPR005202Transcription factor GRAS
PfamPF035144.6E-131172542IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MQTSQNHEIS YGSDRFYVEP VQNLESYCLP SIENLDNYSS SDNSCQTFYP SHQTLEPYNT  60
LESASTSNNS LPYQNSPSTH SFSPNNSPGS TLRPQHSLEF VNGSPEEEDS YLIYHDHDDL  120
RHKMSELESV MRGPNVEMLE MYDTKVQEES ASFLLEAEKW KKNVEMVSRG DLKEMLYTCA  180
KAVDENDIET IEWMVTELRK IVSVSGSPIE RLGAYMLEAL VSKIASSGST IYKSLKCSEP  240
TGNELLSYMH VLYEICPYFK FGYMSANGAI AEAMKEENEV HIIDFQIGQG TQWVSLIQAL  300
ARRPGGPPKI RITGIDDSYS SNVRGGGVDI VGEKLLTLAQ SCHVPFEFHA VRVYPSEVRL  360
EDFELRPNEA VAVNFAIMLH HVPDESVNIH NHRDRLLRLA KHMSPKVVTL VEQEFNTNNA  420
PFLQRFLETM NYYSAVYESI DVVLPRDHKE RINVEQHCLA REVVNLVACE GEERVERHEL  480
LSKWRMRFTM AGFTPYPLSS FINSSIKNLL ESYRGHYTLE ERDGALFLGW MNQDLIASCA  540
WR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-611745426375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.123160.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g056110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT9610580.0CT961058.16 M.truncatula DNA sequence from clone MTH2-80N17 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600261.10.0scarecrow-like protein 21
RefseqXP_024635367.10.0scarecrow-like protein 21
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLG7J2110.0G7J211_MEDTR; GRAS family transcription factor
STRINGAES705120.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]