PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g052450.1
Common NameMTR_3g052450
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 531aa    MW: 59724.6 Da    PI: 6.3784
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g052450.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.6e-184289148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTt Ed +l+d+v+++G g+W+++ + +g++R++k+c++rw ++l
  Medtr3g052450.1 42 KGPWTTGEDTILIDYVTKHGEGNWNAVQKNIGLNRCGKSCRLRWANHL 89
                     79******************************************9986 PP
2Myb_DNA-binding50.16.2e-1695138146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+++ eE++++v++++q+G++ W++ a+ ++ gRt++++k++w++
  Medtr3g052450.1  95 KGAFSHEEEKIIVELHAQFGNK-WARMAALLP-GRTDNEIKNYWNT 138
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7433789IPR017930Myb domain
SuperFamilySSF466891.2E-2939136IPR009057Homeodomain-like
SMARTSM007171.4E-144191IPR001005SANT/Myb domain
PfamPF002494.0E-164289IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-234396IPR009057Homeodomain-like
CDDcd001674.91E-114489No hitNo description
PROSITE profilePS5129424.2990144IPR017930Myb domain
SMARTSM007175.9E-1594142IPR001005SANT/Myb domain
PfamPF002492.7E-1495138IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2497143IPR009057Homeodomain-like
CDDcd001678.46E-1197138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MEHMTNIVDA VNDENVFFGM IERGGGGESG SSGGGDEANL KKGPWTTGED TILIDYVTKH  60
GEGNWNAVQK NIGLNRCGKS CRLRWANHLR PNLKKGAFSH EEEKIIVELH AQFGNKWARM  120
AALLPGRTDN EIKNYWNTRI KRRQRQGLPL YSDEHDRPNT PTTPSQCVTP TGTNPNNITP  180
KFEFFNQNHH QYQQQQQQHQ HLHPLSPTPT HHQSPLSSPL QHRQQRQHSY SPHTFIETSP  240
TPLSSSPSPL SFTFQRPAPL LSTPFRFKRY RSSPNFSLQV PSVTQNCASL HDPSLTSHQD  300
SFRFPIQYNS SFSQYFHSPM FESDQGVSSS SLPFSTKLEL PSNQYSRLSS EQDVNVNNIE  360
FNDPNSFQTN NSGLMGDLLM EAQTLASGQN SKKRNYLSLN EGNDMFNGFQ SLDDFPLSSL  420
YWSSNSGQKP KEEAPDLSKF MNDDISTMLT MMPSSTMQIQ DWNNNNNNNA SEVTNVQSSS  480
GVVMADENFG LDIKPIASLF PLTNTTNNSN DDNNSENNSF YTWGNLPELC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31391434107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g052450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1474350.0AC147435.22 Medicago truncatula clone mth2-19c18, complete sequence.
GenBankCT9625040.0CT962504.10 M.truncatula DNA sequence from clone MTH2-38L12 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600125.10.0transcription factor MYB97
TrEMBLG7IY340.0G7IY34_MEDTR; Myb-like DNA-binding domain protein
STRINGAES703760.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.12e-65myb domain protein 33
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]