PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g052430.1
Common NameMTR_3g052430
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 539aa    MW: 60381.3 Da    PI: 6.3886
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g052430.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.91e-174390148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTt Ed +l+d+v+++G g+W+++ +  g++R++k+c++rw ++l
  Medtr3g052430.1 43 KGPWTTGEDTILIDYVTKHGEGNWNAVQKNTGLNRCGKSCRLRWANHL 90
                     79******************************************9986 PP
2Myb_DNA-binding50.64.5e-1696139146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+++ eE++l+v++++q+G++ W++ a+ ++ gRt++++k++w++
  Medtr3g052430.1  96 KGAFSHEEEKLIVELHAQFGNK-WARMAALLP-GRTDNEIKNYWNT 139
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-233893IPR009057Homeodomain-like
PROSITE profilePS5129416.5893890IPR017930Myb domain
SuperFamilySSF466891.12E-2940137IPR009057Homeodomain-like
SMARTSM007179.3E-144292IPR001005SANT/Myb domain
PfamPF002493.0E-154390IPR001005SANT/Myb domain
CDDcd001673.05E-104590No hitNo description
PROSITE profilePS5129424.39291145IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-2494144IPR009057Homeodomain-like
SMARTSM007174.0E-1595143IPR001005SANT/Myb domain
PfamPF002491.4E-1496139IPR001005SANT/Myb domain
CDDcd001675.84E-1198139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MEHMTNIVDA VNDENVFFGM MERGGGGEGG GCSGDGDEAN LKKGPWTTGE DTILIDYVTK  60
HGEGNWNAVQ KNTGLNRCGK SCRLRWANHL RPNLKKGAFS HEEEKLIVEL HAQFGNKWAR  120
MAALLPGRTD NEIKNYWNTR IKRRQRQGLP LYSDEHDLPN TPTTPTTPSQ CVTPTGTSPN  180
NITPKFEFLN QNNHQYQQQH QHQHLHPLSP TPTHHHSPLS SPLQHRQQRQ HSYSPHTFIE  240
TSPTPFSSSP SPLSFTFQRP APLLSAPFRF KRYRSSPNFS LQVPSVIQNC ASLHDPSLTS  300
HQDSFRFPIQ YNSSFSQYFH TPMFESDRGV SSSSLPFSTK LELPSNQYSR LSSEQDVNVN  360
NIEFNDPNPF QTNNSGLMGD LLMEAQTLAS GQNSKKRSYL SLNEGNDMFN GCQSLDDFPL  420
SSVYWSSNSG QKLKEEAPDL SKFMNDDIST MLTVMPSSTM QIQDWNNNNN NNASEVTNVH  480
SSSGVVMADE NFGLDFKPIA SLFPLTNATN NSNDDNNNNN NNNENNGSYT WGNLPELC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30401444107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g052430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1474350.0AC147435.22 Medicago truncatula clone mth2-19c18, complete sequence.
GenBankCT9625040.0CT962504.10 M.truncatula DNA sequence from clone MTH2-38L12 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634592.10.0transcription factor MYB120
TrEMBLG7IY320.0G7IY32_MEDTR; Myb-like DNA-binding domain protein
STRINGAES703740.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.13e-66myb domain protein 33
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]