PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g030700.1
Common NameMTR_3g030700
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 376aa    MW: 42194.6 Da    PI: 7.7368
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g030700.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.4e-12199241754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++Er+RR+++++ +++Lr+++Pk +      K++K++iL  Av+Y+k+L
  Medtr3g030700.1 199 IAERKRRKKLKNNMHKLRSVVPKiS------KMDKVSILGDAVDYLKEL 241
                      68*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.01E-11190245No hitNo description
PROSITE profilePS5088815.091192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-16196268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-13198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9199241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-15199255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5167110.815306375IPR002912ACT domain
CDDcd048736.08E-7307372No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEEDMAPWLK PQIEEEWYMN SIPPHTEELI PNLQNHTQQQ NNVGPSDPNT SVFKHHLGSS  60
FSLPSPKSNF SNLLNINDNI NINGSTTNNK NDNNNPFGSV FNLESQGFSQ TPLSIPRLTL  120
TWLNGFEKKM RKDENGEVEK GLNYNSNESV DAGKMRNHEK NADNNYNSNT IIDNFDDENC  180
VSEGDRKGKK KENPSKSLIA ERKRRKKLKN NMHKLRSVVP KISKMDKVSI LGDAVDYLKE  240
LKQQINDLQS EIKSSSHKSF MPLPMTSTMS TLPVQLKEQL FQNNVSSLKN QPAKVEVRVK  300
EGGIVNIHIT CASKPGVLVS TMMALDSLGL DVHQANISCF NDFSLDVFKV EQHNKDQELA  360
PGKIKAVLLK ALDSH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188206KKKENPSKSLIAERKRRKK
2200207ERKRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g030700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT5733540.0CT573354.6 M.truncatula DNA sequence from clone MTH2-18N13 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603119.31e-171transcription factor ICE1
TrEMBLG7IWT30.0G7IWT3_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES694960.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-63bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]