PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g029590.1
Common NameMTR_3g029590
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 732aa    MW: 78964 Da    PI: 6.04
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g029590.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.3e-06309329526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++f++ G C++ d C +aHg
  Medtr3g029590.1 309 PCPDFRK-GACRRSDMCEYAHG 329
                      8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.87E-1834165IPR020683Ankyrin repeat-containing domain
PfamPF127961.9E-1183156IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.71487163IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.4E-1887167IPR020683Ankyrin repeat-containing domain
CDDcd002041.16E-1487160No hitNo description
SMARTSM002480.002387117IPR002110Ankyrin repeat
PRINTSPR014153.9E-588103IPR002110Ankyrin repeat
PROSITE profilePS5008812.85122157IPR002110Ankyrin repeat
SMARTSM002481.5E-4122154IPR002110Ankyrin repeat
PRINTSPR014153.9E-5141155IPR002110Ankyrin repeat
SMARTSM003564.3E-5304330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.296309331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4337367IPR000571Zinc finger, CCCH-type
SMARTSM0035636339362IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.704339363IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MCGGPDKSKS IATSSSSSSS AAEGSNTVED MKNLTVRTDD SFSSLLEHAS NNDFEDFKVA  60
LDSDASLINE VGFWYVRQKG SNQIVLEHRT PLMVAASYGS IDILKLILSY PEADVNFSCG  120
TDKSTALHCA ASSGSVNAVD AIKLLLSAGA DINSVDANGK RPVDVIVVPI VVPHKLEGVK  180
TILEELLSDS ASEGSVDDCS LPLSLISSSP GSSAPLSSAE NGSPSSPVAP KFTDTAVNST  240
SEKKEYPVDP SLPDIKNSMY ATDEFRMYSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKFHYSCVPC PDFRKGACRR SDMCEYAHGV FECWLHPAQY RTRLCKDGMG CNRRVCFFAH  360
SPEELRPLYV STGSAVPSPR SAASTANVMD MAAAMSLFPG SPSSISLMSQ SPFAQPPLSP  420
SANGNNAWPQ PNVPALHLPG SINQTSRLRS SLSARDMPHD DFNNMLQDFD GQQQILNDLS  480
CFSQPRPGAI SVGRSGRPKT LTPSNLDDLF CAEIASSPRY SDPAAASVFS PTHKSAVFNQ  540
FQQLQSSLSP INTNVMSPTN VEHPLFHQAS YGLSSPGRMS PRSMEALSPM SSRLSAFAQR  600
EKQQQQQQQL RSLSSRELGA NNPLSAVGSP VNSWSKWGSS PIGKADWSVN PNDFGQTQRS  660
TSFEHGNNGE EPDVGWVHSL VKDPTPEKKE KLAGSGPIPS VEKNPNPQAD GIDHSVLGAW  720
LEQLQLDQLV V*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.42960.0leaf| pod| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g029590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1221620.0AC122162.32 Medicago truncatula clone mth2-16g15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003599158.20.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLG7IZG50.0G7IZG5_MEDTR; ARM repeat CCCH-type zinc finger protein
STRINGAES694090.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]