PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g029590.1 | ||||||||
Common Name | MTR_3g029590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C3H | ||||||||
Protein Properties | Length: 732aa MW: 78964 Da PI: 6.04 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.2 | 4.3e-06 | 309 | 329 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++ d C +aHg Medtr3g029590.1 309 PCPDFRK-GACRRSDMCEYAHG 329 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 1.87E-18 | 34 | 165 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.9E-11 | 83 | 156 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 17.714 | 87 | 163 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 3.4E-18 | 87 | 167 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.16E-14 | 87 | 160 | No hit | No description |
SMART | SM00248 | 0.0023 | 87 | 117 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 3.9E-5 | 88 | 103 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.85 | 122 | 157 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1.5E-4 | 122 | 154 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 3.9E-5 | 141 | 155 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.3E-5 | 304 | 330 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.296 | 309 | 331 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-4 | 337 | 367 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 36 | 339 | 362 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.704 | 339 | 363 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 732 aa Download sequence Send to blast |
MCGGPDKSKS IATSSSSSSS AAEGSNTVED MKNLTVRTDD SFSSLLEHAS NNDFEDFKVA 60 LDSDASLINE VGFWYVRQKG SNQIVLEHRT PLMVAASYGS IDILKLILSY PEADVNFSCG 120 TDKSTALHCA ASSGSVNAVD AIKLLLSAGA DINSVDANGK RPVDVIVVPI VVPHKLEGVK 180 TILEELLSDS ASEGSVDDCS LPLSLISSSP GSSAPLSSAE NGSPSSPVAP KFTDTAVNST 240 SEKKEYPVDP SLPDIKNSMY ATDEFRMYSF KVRPCSRAYS HDWTECPFVH PGENARRRDP 300 RKFHYSCVPC PDFRKGACRR SDMCEYAHGV FECWLHPAQY RTRLCKDGMG CNRRVCFFAH 360 SPEELRPLYV STGSAVPSPR SAASTANVMD MAAAMSLFPG SPSSISLMSQ SPFAQPPLSP 420 SANGNNAWPQ PNVPALHLPG SINQTSRLRS SLSARDMPHD DFNNMLQDFD GQQQILNDLS 480 CFSQPRPGAI SVGRSGRPKT LTPSNLDDLF CAEIASSPRY SDPAAASVFS PTHKSAVFNQ 540 FQQLQSSLSP INTNVMSPTN VEHPLFHQAS YGLSSPGRMS PRSMEALSPM SSRLSAFAQR 600 EKQQQQQQQL RSLSSRELGA NNPLSAVGSP VNSWSKWGSS PIGKADWSVN PNDFGQTQRS 660 TSFEHGNNGE EPDVGWVHSL VKDPTPEKKE KLAGSGPIPS VEKNPNPQAD GIDHSVLGAW 720 LEQLQLDQLV V* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.4296 | 0.0 | leaf| pod| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g029590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC122162 | 0.0 | AC122162.32 Medicago truncatula clone mth2-16g15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003599158.2 | 0.0 | zinc finger CCCH domain-containing protein 30 | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | G7IZG5 | 0.0 | G7IZG5_MEDTR; ARM repeat CCCH-type zinc finger protein | ||||
STRING | AES69409 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1732 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g029590.1 |
Entrez Gene | 11419603 |
Publications ? help Back to Top | |||
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