PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g028740.1
Common NameMTR_3g028740
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 344aa    MW: 39282 Da    PI: 5.9437
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g028740.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.6e-162471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+lv++    G g+W+ Iar  g+ R++k+c++rw +yl
  Medtr3g028740.1 24 KGLWSPEEDEKLVRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYL 71
                     678*******************************************97 PP
2Myb_DNA-binding50.74.2e-1677121147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++++E+el+++ +  lG++ W+ Ia++++ gRt++++k++w++ 
  Medtr3g028740.1  77 RGAFSPQEEELIIHFHSILGNR-WSQIAARLP-GRTDNEIKNFWNST 121
                      89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.2361971IPR017930Myb domain
SuperFamilySSF466894.4E-2822118IPR009057Homeodomain-like
SMARTSM007179.1E-132373IPR001005SANT/Myb domain
PfamPF002493.9E-142471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-232578IPR009057Homeodomain-like
CDDcd001677.44E-112771No hitNo description
PROSITE profilePS5129425.41272126IPR017930Myb domain
SMARTSM007176.6E-1676124IPR001005SANT/Myb domain
PfamPF002499.8E-1577121IPR001005SANT/Myb domain
CDDcd001674.23E-1179122No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2579127IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MPMRKPDLIM GKDNNNINKS KLRKGLWSPE EDEKLVRYMI TKGQGCWSDI ARNAGLQRCG  60
KSCRLRWINY LRPDLKRGAF SPQEEELIIH FHSILGNRWS QIAARLPGRT DNEIKNFWNS  120
TLKKRLKTNN NNNSTPSPNN SDTSDQPIDN VFDVKNNMIM PIHEQELMTL CMDSSSSTSS  180
SSMQSMHMHM HTMVLPDQFD PFSLLSNNHY DMTSFHAHDL PNSCLTQVGN MVDDIGLHSD  240
DHYGILEANK MGLLENDFEL PPLESRISIE DKCALIGDDH NVKSHNNHFN NSCFNNTNHI  300
QNSNEDLFGF GNHGQGENLR MGEWDLEGLM QDISYFPPLD FQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27221285110B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121127LKKRLKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g028740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013459180.10.0transcription factor MYB83
TrEMBLA0A072UVZ00.0A0A072UVZ0_MEDTR; Myb transcription factor
STRINGXP_004499875.11e-169(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.17e-75myb domain protein 83
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]