PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g028190.1
Common NameMTR_3g028190
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 358aa    MW: 39934.4 Da    PI: 7.2509
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g028190.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.6e-06326226
                     -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                     k++lC+ffa  G C  G+ C F+H+
  Medtr3g028190.1  3 KRVLCKFFAH-GACLKGEHCEFSHD 26
                     99****6666.*************5 PP

2zf-CCCH27.55.5e-093454526
                     --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     +C f+++ G C yG+rC++ H+
  Medtr3g028190.1 34 ICTFYQK-GVCAYGSRCRYDHV 54
                     7******.*************7 PP

3zf-CCCH18.82.9e-06139160426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++C+ fa+ G C++G++C+  Hg
  Medtr3g028190.1 139 PICS-FAAAGNCPRGEQCPHVHG 160
                      6788.*************98887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.671128IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-7326IPR000571Zinc finger, CCCH-type
PfamPF156637.6E-8765No hitNo description
PROSITE profilePS5010314.3892956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00313055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-53253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.112135162IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-4136161IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.41E-13193268No hitNo description
Gene3DG3DSA:3.30.40.102.6E-10197263IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF136392.0E-7203262IPR001841Zinc finger, RING-type
CDDcd001627.69E-4203263No hitNo description
PROSITE profilePS5008912.401204262IPR001841Zinc finger, RING-type
SMARTSM001844.4E-7204261IPR001841Zinc finger, RING-type
PROSITE patternPS005180228237IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.019291319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732291320IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGEH CEFSHDWKAP PNNICTFYQK GVCAYGSRCR YDHVKASRAQ  60
SSTPSSSITE HQPLVSESAV LGNTRVTSNG VATAAEFSLF STPFVLPSEQ AWNQESAQLD  120
FLREDDVVQS VITSPSELPI CSFAAAGNCP RGEQCPHVHG DLCPSCGRQC LHPFRPEERE  180
EHMMSCRNKQ KHLEALKRSQ EIECSVCLER VLSKPTAAER KFGLLSECDH PFCVSCIRNW  240
RSSNPTLGMD VNSTLRACPI CRKLSYFVVP SVIWYATSEE KMEIIDTYKA KLKSIDCKHF  300
DFGEGNCPFG TSCFYKHAYR DGRLEEVALR HLGAADGDTI IAKDIRLSDF LANMHLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g028190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465660.0AC146566.7 Medicago truncatula clone mth2-71p5, complete sequence.
GenBankAC2035450.0AC203545.6 Medicago truncatula clone mth2-60c13, complete sequence.
GenBankCU4685740.0CU468574.5 M.truncatula DNA sequence from clone MTH2-69A16 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003599126.20.0putative RING-type E3 ubiquitin transferase C3H69
RefseqXP_024635698.10.0putative RING-type E3 ubiquitin transferase C3H69
SwissprotE0X9N41e-174C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLG7IWL80.0G7IWL8_MEDTR; Makorin RING-zinc-finger protein
STRINGAES693770.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-165C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]