PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g028190.1 | ||||||||
Common Name | MTR_3g028190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C3H | ||||||||
Protein Properties | Length: 358aa MW: 39934.4 Da PI: 7.2509 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.9 | 2.6e-06 | 3 | 26 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffa G C G+ C F+H+ Medtr3g028190.1 3 KRVLCKFFAH-GACLKGEHCEFSHD 26 99****6666.*************5 PP | |||||||
2 | zf-CCCH | 27.5 | 5.5e-09 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G C yG+rC++ H+ Medtr3g028190.1 34 ICTFYQK-GVCAYGSRCRYDHV 54 7******.*************7 PP | |||||||
3 | zf-CCCH | 18.8 | 2.9e-06 | 139 | 160 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ G C++G++C+ Hg Medtr3g028190.1 139 PICS-FAAAGNCPRGEQCPHVHG 160 6788.*************98887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.671 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-5 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-7 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 7.6E-8 | 7 | 65 | No hit | No description |
PROSITE profile | PS50103 | 14.389 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0031 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-5 | 32 | 53 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.112 | 135 | 162 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.9E-4 | 136 | 161 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 1.41E-13 | 193 | 268 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 2.6E-10 | 197 | 263 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Pfam | PF13639 | 2.0E-7 | 203 | 262 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 7.69E-4 | 203 | 263 | No hit | No description |
PROSITE profile | PS50089 | 12.401 | 204 | 262 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 4.4E-7 | 204 | 261 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 228 | 237 | IPR017907 | Zinc finger, RING-type, conserved site |
SMART | SM00356 | 0.019 | 291 | 319 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.732 | 291 | 320 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MSKRVLCKFF AHGACLKGEH CEFSHDWKAP PNNICTFYQK GVCAYGSRCR YDHVKASRAQ 60 SSTPSSSITE HQPLVSESAV LGNTRVTSNG VATAAEFSLF STPFVLPSEQ AWNQESAQLD 120 FLREDDVVQS VITSPSELPI CSFAAAGNCP RGEQCPHVHG DLCPSCGRQC LHPFRPEERE 180 EHMMSCRNKQ KHLEALKRSQ EIECSVCLER VLSKPTAAER KFGLLSECDH PFCVSCIRNW 240 RSSNPTLGMD VNSTLRACPI CRKLSYFVVP SVIWYATSEE KMEIIDTYKA KLKSIDCKHF 300 DFGEGNCPFG TSCFYKHAYR DGRLEEVALR HLGAADGDTI IAKDIRLSDF LANMHLS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g028190.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC146566 | 0.0 | AC146566.7 Medicago truncatula clone mth2-71p5, complete sequence. | |||
GenBank | AC203545 | 0.0 | AC203545.6 Medicago truncatula clone mth2-60c13, complete sequence. | |||
GenBank | CU468574 | 0.0 | CU468574.5 M.truncatula DNA sequence from clone MTH2-69A16 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003599126.2 | 0.0 | putative RING-type E3 ubiquitin transferase C3H69 | ||||
Refseq | XP_024635698.1 | 0.0 | putative RING-type E3 ubiquitin transferase C3H69 | ||||
Swissprot | E0X9N4 | 1e-174 | C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69 | ||||
TrEMBL | G7IWL8 | 0.0 | G7IWL8_MEDTR; Makorin RING-zinc-finger protein | ||||
STRING | AES69377 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10211 | 33 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-165 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g028190.1 |
Entrez Gene | 11419599 |
Publications ? help Back to Top | |||
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