PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g028170.1
Common NameMTR_3g028170
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 482aa    MW: 54062.5 Da    PI: 5.0395
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g028170.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.9e-06424425
                     ---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                     + C+f+ar G C  Gd+C F+H
  Medtr3g028170.1  4 RVCKFYAR-GVCLKGDQCDFSH 24
                     68******.************* PP
2zf-CCCH27.65.2e-093353526
                     --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     +C+++++ G C yG+rC++ H+
  Medtr3g028170.1 33 ICSYYQK-GSCAYGSRCRYKHV 53
                     8******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.45127IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4226IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-7325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4428IPR000571Zinc finger, CCCH-type
PfamPF156631.8E-7563No hitNo description
SMARTSM003562.9E-42854IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8782855IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-52952IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-53252IPR000571Zinc finger, CCCH-type
SuperFamilySSF578506.06E-13176253No hitNo description
Gene3DG3DSA:3.30.40.102.2E-10179248IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001622.80E-4185248No hitNo description
PfamPF000979.7E-7186246IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.15186247IPR001841Zinc finger, RING-type
SMARTSM001841.8E-5186246IPR001841Zinc finger, RING-type
PROSITE patternPS005180210219IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.056276305IPR000571Zinc finger, CCCH-type
SMARTSM003560.048276304IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MSNRVCKFYA RGVCLKGDQC DFSHQRKDTA SDICSYYQKG SCAYGSRCRY KHVRASQASS  60
SASMVSDSAV PVARSAKVAS NWVPKVTKVP SPDKRGVKGL QRKHQDSTDV GESSTGSARP  120
HENLFCKFAA ANCPGGCSRI HGNQCLYCRK YCLHPTDKKE KENHLRTCDK KEKYLLALKN  180
SEEIECNVCL ERVLSKPKPS ECKFGLLPEC DHAFCLSCIR NWRSSAPTSA MEIGSNTNTV  240
RTCPVCRKLS YFVIPSGIWF TTKEEKQEII DNYKANCRLI DCKHFDSGNG NCPFGASCFY  300
KHTVKPGSYT WRHRRPPPQR RQNHFDMHDM LDVLGEVDLS SGEFYSIMRD SDFFEGMDPF  360
EMMALSDSLA GGSGPCLGPF DSDDDDDDGF RVSRMAAMQE AMAIGMDAFG PDDDEEEFNV  420
FRMAAMQEAM VSGIDDFGPD DFPGIDPMDA ALISMMMHSH MDDEEDDEDY EDEEEYTDDE  480
Y*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.46820.0flower| leaf| root| seed| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g028170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1375040.0BT137504.1 Medicago truncatula clone JCVI-FLMt-21H19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003599125.10.0putative RING-type E3 ubiquitin transferase C3H69
SwissprotE0X9N41e-109C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLG7IWL70.0G7IWL7_MEDTR; Makorin RING-zinc-finger protein
STRINGAES693760.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151431113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.23e-97C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]