PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g027650.3
Common NameMTR_3g027650
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 402aa    MW: 45008.6 Da    PI: 5.0686
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g027650.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12334379655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+ l Pk+    +k  s a++L +AveYIk+Lq
  Medtr3g027650.3 334 SIAERVRRTRISDRIKKLQGLFPKS----DKQTSTADMLDLAVEYIKDLQ 379
                      689*********************9....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.176328378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-14331389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.22E-11332383No hitNo description
Gene3DG3DSA:4.10.280.102.0E-13333386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9334379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-11334384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MGAMYEELRR NQEMDSSSII HSKQHYQQQN SGLLMRYNSA PTSLFTNLID NNAQNFINNE  60
ESFTNESYLP STSSEMDTML SKLISSNNGW NNSEENLQEF DVKPVKQEIG ESVAQQNGNY  120
SYGGSELIYQ GFSNGSGNGF YGSFGGVNTM ESDDSNQSKI GVRNCSNLIR QKSSPAEFFS  180
NENGFATLTL REVESFKANG ISNGTLNFSS RPSTCLKRMP QIAENGIQSL ESNCDQTINL  240
VNENGSSKFT NEFWDNSAFN AHKTENEDEI MFSTTNGLDS QEADFGYQNL GLTHHLSLPS  300
SSTKMTSMEK FLQVQGSVPC KIRAKRGFAT HPRSIAERVR RTRISDRIKK LQGLFPKSDK  360
QTSTADMLDL AVEYIKDLQE QVQVQENYIP CPKNEKNKHI E*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.21760.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g027650.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1401870.0BT140187.1 Medicago truncatula clone JCVI-FLMt-20F22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003599090.20.0transcription factor bHLH130
RefseqXP_013459160.10.0transcription factor bHLH130
TrEMBLA0A072UU740.0A0A072UU74_MEDTR; Transcription factor bHLH122-like protein
STRINGAES693410.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-37bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]