PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g026050.1
Common NameMTR_3g026050
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TCP
Protein Properties Length: 386aa    MW: 43448.1 Da    PI: 7.9858
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g026050.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP94.12.8e-2956193389
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 
                      g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ k  i++l+ ++++++ +   + +s+    ++ ++       
  Medtr3g026050.1  56 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLGQPSKVIDWLLEATKLDIDKLPPLQFPQSFSQfHPLHSQTLLPFHDQSsniashe 149
                      78*************************************************************9988844343333332222222221234444 PP

              TCP  89 ...........................................k 89 
                                                                 +
  Medtr3g026050.1 150 lslgplydpnstfvgiqnlmarskfwdidsrtkgkevereyfsE 193
                      44556655555555555555555555554444444444444441 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-2657182IPR005333Transcription factor, TCP
PROSITE profilePS5136928.27957115IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MMASSREGNY QAKQEGGDTS MENIEKISKA PSSTSRQWST SSLRNPRIVR VSRTFGGKDR  60
HSKVCTIRGL RDRRIRLSVP TAIQLYDLQD KLGLGQPSKV IDWLLEATKL DIDKLPPLQF  120
PQSFSQFHPL HSQTLLPFHD QSSNIASHEL SLGPLYDPNS TFVGIQNLMA RSKFWDIDSR  180
TKGKEVEREY FSEKDKWIKT NEEENQVGEA SYNNFHQVST QKLFPMETHS NFLNNAMSYN  240
NYHSEASSLS LSQFGSSNGL FQSHHQQVDP NQSNGNGLHF PFPFANSQLL FGPSSSSTTP  300
SSSHLSSTPF MNNPVENDPR IQFNHFQFIN SSSSQTMPHP LIPSFHHSFN SPPVRPFPIP  360
FSSKLLDSNN NNNSNQLDDN SAPRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1862116155Putative transcription factor PCF6
5zkt_B3e-1862116155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g026050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU1796360.0CU179636.4 M.truncatula DNA sequence from clone MTH2-26G17 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634432.10.0transcription factor TCP5
TrEMBLG7IZC40.0G7IZC4_MEDTR; Putative transcription factor TCP family
STRINGAES692600.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-52TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]