PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g017420.1 | ||||||||
Common Name | MTR_3g017420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 77aa MW: 8690.13 Da PI: 6.5088 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.6 | 1.9e-10 | 3 | 42 | 12 | 54 |
AP2 12 rgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 + +W++eIrdp + r++lg+f t eeAa ++ +++++ Medtr3g017420.1 3 WVKWAVEIRDPQ----QgVRVWLGTFSTVEEAAIIYDVVARCIH 42 669*******94....25********************999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 15.659 | 1 | 51 | IPR001471 | AP2/ERF domain |
PIRSF | PIRSF038123 | 9.4E-15 | 1 | 71 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
Gene3D | G3DSA:3.30.730.10 | 6.7E-20 | 2 | 52 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.95E-21 | 2 | 53 | No hit | No description |
SuperFamily | SSF54171 | 4.25E-14 | 2 | 52 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.5E-15 | 2 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 77 aa Download sequence Send to blast |
MPWVKWAVEI RDPQQGVRVW LGTFSTVEEA AIIYDVVARC IHDDKTKLNF PETHADVVAP 60 LLQQRSSVLA LIKLLY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.15517 | 2e-33 | glandular trichome| root| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in stems and leaves, and, to a lower extent, in roots, siliques and flowers. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g017420.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU651600 | 1e-126 | CU651600.12 M.truncatula DNA sequence from clone MTH2-35P8 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013463172.1 | 1e-21 | ethylene-responsive transcription factor ERF071 | ||||
Swissprot | P42736 | 2e-21 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | G7IYV0 | 8e-49 | G7IYV0_MEDTR; Ethylene response factor | ||||
STRING | AES68869 | 1e-49 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21074 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 9e-24 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g017420.1 |
Entrez Gene | 11419760 |