PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g014660.1
Common NameMTR_3g014660
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family SRS
Protein Properties Length: 330aa    MW: 35636.5 Da    PI: 7.4855
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g014660.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7021801e-551322886153
           DUF702   6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel..kskkqsalsstklssaesk 97 
                        CqdCGn+akkdC+++RCRtCCk rg+dC+th+kstW+p+++rrer  ++ a        +  +  kr++ l  +s++++a+s+++ s+++++
  Medtr3g014660.1 132 RVCQDCGNRAKKDCVFRRCRTCCKGRGYDCSTHLKSTWIPSTRRREREVEMFAG---GGDGEGCSGVKRQKGLlgSSQNAAATSHSSNSNGTTP 222
                      58********************************************96665554...3444455666666665556777888888999999999 PP

           DUF702  98 keletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                      k++ tss          lP +v+++avfrc rv+++ +ge+e+aY ++v+i+GhvfkG+Lyd+G++
  Medtr3g014660.1 223 KSFATSSchqdagfkegLPGHVNAPAVFRCHRVTAIGNGEDEFAYLATVHISGHVFKGFLYDHGVD 288
                      9999999999******************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.9E-52133288IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.8E-25133175IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.2E-23240287IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MSMLGLRDLV LIAPSPSSLQ HHHQQNQNQN QNQNQPISHD HNSNHSLPSS ASLSVGFGIF  60
PLLTATPCMP QQQSQNNEVQ ENPSNNNNFW NLRMCPEVVN LPKKGVITEE ENHGKIAMME  120
SEENGVYGSE YRVCQDCGNR AKKDCVFRRC RTCCKGRGYD CSTHLKSTWI PSTRRREREV  180
EMFAGGGDGE GCSGVKRQKG LLGSSQNAAA TSHSSNSNGT TPKSFATSSC HQDAGFKEGL  240
PGHVNAPAVF RCHRVTAIGN GEDEFAYLAT VHISGHVFKG FLYDHGVDGK NPMPCVSELQ  300
LGNNCSGKNG ECSSAIGVPN NNAYPASAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173198RRREREVEMFAGGGDGEGCSGVKRQK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.70820.0flower| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g014660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU5707630.0CU570763.5 M.truncatula DNA sequence from clone MTH2-172G19 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003598516.10.0protein LATERAL ROOT PRIMORDIUM 1
TrEMBLG7J0K60.0G7J0K6_MEDTR; LRP1 carboxy-terminal domain protein
STRINGAES687670.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.24e-51Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]