PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g014660.1 | ||||||||
Common Name | MTR_3g014660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | SRS | ||||||||
Protein Properties | Length: 330aa MW: 35636.5 Da PI: 7.4855 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 180 | 1e-55 | 132 | 288 | 6 | 153 |
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel..kskkqsalsstklssaesk 97 CqdCGn+akkdC+++RCRtCCk rg+dC+th+kstW+p+++rrer ++ a + + kr++ l +s++++a+s+++ s+++++ Medtr3g014660.1 132 RVCQDCGNRAKKDCVFRRCRTCCKGRGYDCSTHLKSTWIPSTRRREREVEMFAG---GGDGEGCSGVKRQKGLlgSSQNAAATSHSSNSNGTTP 222 58********************************************96665554...3444455666666665556777888888999999999 PP DUF702 98 keletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 k++ tss lP +v+++avfrc rv+++ +ge+e+aY ++v+i+GhvfkG+Lyd+G++ Medtr3g014660.1 223 KSFATSSchqdagfkegLPGHVNAPAVFRCHRVTAIGNGEDEFAYLATVHISGHVFKGFLYDHGVD 288 9999999999******************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 4.9E-52 | 133 | 288 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.8E-25 | 133 | 175 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.2E-23 | 240 | 287 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MSMLGLRDLV LIAPSPSSLQ HHHQQNQNQN QNQNQPISHD HNSNHSLPSS ASLSVGFGIF 60 PLLTATPCMP QQQSQNNEVQ ENPSNNNNFW NLRMCPEVVN LPKKGVITEE ENHGKIAMME 120 SEENGVYGSE YRVCQDCGNR AKKDCVFRRC RTCCKGRGYD CSTHLKSTWI PSTRRREREV 180 EMFAGGGDGE GCSGVKRQKG LLGSSQNAAA TSHSSNSNGT TPKSFATSSC HQDAGFKEGL 240 PGHVNAPAVF RCHRVTAIGN GEDEFAYLAT VHISGHVFKG FLYDHGVDGK NPMPCVSELQ 300 LGNNCSGKNG ECSSAIGVPN NNAYPASAS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 173 | 198 | RRREREVEMFAGGGDGEGCSGVKRQK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.7082 | 0.0 | flower| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g014660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU570763 | 0.0 | CU570763.5 M.truncatula DNA sequence from clone MTH2-172G19 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003598516.1 | 0.0 | protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | G7J0K6 | 0.0 | G7J0K6_MEDTR; LRP1 carboxy-terminal domain protein | ||||
STRING | AES68767 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5704 | 31 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 4e-51 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g014660.1 |
Entrez Gene | 11420597 |
Publications ? help Back to Top | |||
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