PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g012030.1
Common NameMTR_3g012030
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NF-YC
Protein Properties Length: 276aa    MW: 30415.3 Da    PI: 4.5572
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g012030.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC40.56e-131693098
            NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                     ++adedv +i+  +Pvl+ska elf+ +l  r++  + +   +t++   ++ +v++ ++fdfl div r
  Medtr3g012030.1  1 MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVQSYNVFDFLRDIVSR 69
                     899***************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.9E-19169IPR009072Histone-fold
PfamPF008081.7E-12154IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471138.38E-20170IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MQADEDVGKI ALAVPVLVSK ALELFLQDLC DRTYEITLQR GAKTMNALHL KHCVQSYNVF  60
DFLRDIVSRV PDYSHGHGHS EAGADDRAVP KRRKAAGDDC NDSDEEAKRS KMLELGHTGS  120
TGRGRGRGRG RGRGRGARTA ERETLHQQVE SEPCTSIQQT SKDVPNTSMA IDNGSEPKEL  180
SKENIAAHEE STQSLRNIDL NANLHENEEK NNTSTDIPTQ APLPEPAATT DMQHEEIPGW  240
SLSDVDKMAI DTLQLAANLG NRLDEDEEDY DEEEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A2e-141552175Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124134RGRGRGRGRGR
2126135RGRGRGRGRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.98080.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g012030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9183000.0JQ918300.1 Medicago truncatula nuclear transcription factor Y subunit C8 (NF-YC8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458915.10.0dr1-associated corepressor homolog isoform X1
TrEMBLA0A072UTK60.0A0A072UTK6_MEDTR; Negative cofactor 2 transcriptional co-repressor, putative
STRINGXP_004499778.11e-143(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.13e-62nuclear factor Y, subunit C11
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]