PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr3g005230.1 | ||||||||
Common Name | MTR_3g005230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 260aa MW: 30321.9 Da PI: 7.7084 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 20.4 | 1.2e-06 | 138 | 187 | 14 | 63 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 14 ReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R + + R+RK ++i eLe+ v++L+ae + ele l ++ l +e+ Medtr3g005230.1 138 RNSGQQHRARKAQYIGELERSVQALQAEGYEVSAELEFLDQQNLILGMEN 187 5677889*************************999999999887777766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 7.3E-6 | 128 | 200 | No hit | No description |
SuperFamily | SSF57959 | 3.09E-6 | 137 | 188 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 260 aa Download sequence Send to blast |
MEISNSLPNF QDHQLPPKIS NSSRYDEICL KERLMSELGN EGGIRRHQRT YSDSMLSEQQ 60 QQEVPCWLKD LLDDEEDQKQ PSTVCSNKTH RRSSSDSLAY LNNKTILQHS PERKVVDSQP 120 SFLQQHHSRS DHSKRGKRNS GQQHRARKAQ YIGELERSVQ ALQAEGYEVS AELEFLDQQN 180 LILGMENRAL KQRLDSLSQE HFIKCLEQEV LEREITRLRN LYQQQQHKQH QQSSNNKRIM 240 VGIDLNNVKI LMHQLPNFL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr3g005230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC125481 | 0.0 | AC125481.23 Medicago truncatula clone mth2-15n13, complete sequence. | |||
GenBank | CT009492 | 0.0 | CT009492.5 M.truncatula DNA sequence from clone MTH2-93A21 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003598009.2 | 0.0 | basic leucine zipper 61 | ||||
TrEMBL | G7IYC8 | 0.0 | G7IYC8_MEDTR; Uncharacterized protein | ||||
STRING | AES68260 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF27174 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G58110.2 | 2e-33 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr3g005230.1 |
Entrez Gene | 11414133 |
Publications ? help Back to Top | |||
---|---|---|---|
|