PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g461920.1 | ||||||||
Common Name | MTR_2g461920 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | SBP | ||||||||
Protein Properties | Length: 540aa MW: 59024.1 Da PI: 6.967 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.9 | 2.6e-42 | 171 | 246 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls++k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q Medtr2g461920.1 171 CQVYGCNKDLSSCKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQ 246 **************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.4E-33 | 165 | 232 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.573 | 168 | 245 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.77E-39 | 169 | 249 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.0E-31 | 171 | 244 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence Send to blast |
MESWSFDSRD KGYVSNDTLG SRTKGSILGW DLKTPSSFLP QQNIENDNNN HGFEELGFHG 60 MLGKQLSNVV DDDDDVVVGS KIVTSNSFVM ATPNAFSERE QQHFNSKHSN SIGDTNGSNS 120 LIDLKLGRFG DHRDGIGTPF SKGTTILSSS GSSTPSKRVR SSAIHSQIAY CQVYGCNKDL 180 SSCKDYHKRH KVCEVHSKTS KVIVNGIEQR FCQQCSRFHL LAEFDDGKRS CRKRLAGHNE 240 RRRKPQVGIH SGRAGRLLQS YGDSRFQGTM LTSASFICQD ILPGEVFSSE KCGNSNWWRP 300 IKAEGGTGFR PLSSIPITNA HPQSRTLFPS YNNKQFPFLQ ENGATSATGS IFCENNSQYP 360 PIQGGSNSGS QSLFQDTSLG SEDFNVFETE SAVQGLSGVS DGGCALSLLS SQSQNSSSQS 420 TGIPMPGHLV IPSSHSHYSM SHVSESGVSD RFPSELNHTD GSHLSPILIS NNNEIAHFEL 480 VDGVFQGSDF VNVKDRLSCE DGTTIDLLQL SSQLQRVEHQ RRALQVKREN DSSCSLQIT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-29 | 166 | 244 | 6 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g461920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013464103.1 | 0.0 | squamosa promoter-binding-like protein 16 | ||||
TrEMBL | A0A072V9R5 | 0.0 | A0A072V9R5_MEDTR; LIGULELESS 1 protein, putative | ||||
STRING | XP_004488431.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 1e-45 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g461920.1 |
Entrez Gene | 25488431 |
Publications ? help Back to Top | |||
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