PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g461240.1
Common NameMTR_2g461240
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TALE
Protein Properties Length: 368aa    MW: 41608.2 Da    PI: 6.0578
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g461240.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.5e-073053372254
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       +yp++e++++L +++gL+ +q+ +WF N+R +
  Medtr2g461240.1 305 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 337
                      59*****************************87 PP
2ELK30.58.2e-11258279122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKh+L+++Y+++++++++E++
  Medtr2g461240.1 258 ELKHELKQGYKSKIVDIREEIL 279
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.1E-1892136IPR005540KNOX1
PfamPF037902.3E-1794135IPR005540KNOX1
SMARTSM012562.0E-26146201IPR005541KNOX2
PfamPF037916.5E-19151200IPR005541KNOX2
SMARTSM011883.4E-4258279IPR005539ELK domain
PROSITE profilePS5121310.092258278IPR005539ELK domain
PfamPF037893.2E-7258279IPR005539ELK domain
PROSITE profilePS5007111.612278341IPR001356Homeobox domain
SMARTSM003891.2E-10280345IPR001356Homeobox domain
SuperFamilySSF466897.27E-16280344IPR009057Homeodomain-like
CDDcd000869.40E-11281342No hitNo description
Gene3DG3DSA:1.10.10.607.4E-25285342IPR009057Homeodomain-like
PfamPF059209.8E-18298337IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MAFHHDHLSH EINFQPFNEE QQLNQSRDMQ RLLPFTGAGA GSAPNWLNNA VNLRQQNFLH  60
LQPDTSQNED VRGITRDRNR AESNTESSEE LSQYKADILG HPLYDQLLSA HVSCLRIATP  120
VDQLPRIDAQ LQQSQRVVDK YSSLANANGV VDEKELDQFM THYVLLLCAF KEQLQQHVRV  180
HAMEAVMACW ELEQSLQSLT GVSPGEGSGA TMSDDEDDQA ESNANLYEGS LDGGDSLSFG  240
PLVPTESERS LMERVRQELK HELKQGYKSK IVDIREEILR KRRAGKLPGD TTSLLKAWWQ  300
SHSKWPYPTE EDKARLVQET GLQLKQINNW FINQRKRNWH TNPSSSTGSK TKRKSSGAGE  360
TSNQSFI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.145600.0flower| leaf| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g461240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2966920.0KP296692.1 Pisum sativum cultivar SGE class II knotted-1-like 10 homeobox transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013464062.10.0homeobox protein knotted-1-like 4
SwissprotP480001e-165KNAT3_ARATH; Homeobox protein knotted-1-like 3
SwissprotP480011e-165KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLA0A072V8D40.0A0A072V8D4_MEDTR; Class II knotted-like homeobox protein
STRINGXP_004514060.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-156KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]