PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g450070.2 | ||||||||
Common Name | MTR_2g450070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ARR-B | ||||||||
Protein Properties | Length: 667aa MW: 73020.3 Da PI: 6.457 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89 | 4.5e-28 | 213 | 266 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+peLH++Fv av+ L G+++A+Pk+ilelm+++g+t+e+v+SHLQkYRl Medtr2g450070.2 213 KPRVVWSPELHKKFVGAVNLL-GADRAVPKKILELMNIEGITRENVASHLQKYRL 266 79*******************.********************************8 PP | |||||||
2 | Response_reg | 79.5 | 1.2e-26 | 24 | 132 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 vl vdD+p+ +++l+++l++ +y +v++a++g + l++l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++++++ +++ + + Medtr2g450070.2 24 VLAVDDNPTCLKVLAKLLSECKY-HVTTATNGFDGLKMLRENRknFDLVISDVAMPDMDGFKLLELVGL-EMDLPVIMLSGYSDTSMVFKGVTH 115 799********************.***************888888*******************87754.558********************* PP TESEEEESS--HHHHHH CS Response_reg 93 GakdflsKpfdpeelvk 109 Ga d+l+Kp+ eel++ Medtr2g450070.2 116 GACDYLVKPVRLEELRN 132 ***************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 3.4E-151 | 1 | 655 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 1.08E-37 | 21 | 146 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.8E-43 | 21 | 145 | No hit | No description |
SMART | SM00448 | 4.9E-34 | 22 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 44.207 | 23 | 138 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 8.9E-24 | 24 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.35E-29 | 25 | 137 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-28 | 210 | 270 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.774 | 210 | 269 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.76E-19 | 211 | 270 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.3E-24 | 213 | 266 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.1E-8 | 215 | 265 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 667 aa Download sequence Send to blast |
MAVVENQSRD EDGVIDRFPV GMRVLAVDDN PTCLKVLAKL LSECKYHVTT ATNGFDGLKM 60 LRENRKNFDL VISDVAMPDM DGFKLLELVG LEMDLPVIML SGYSDTSMVF KGVTHGACDY 120 LVKPVRLEEL RNIWQHVVRK KKTYSKDVNK ASNEDKVPNI SGGSNQNILE NSVDQNKRLG 180 KRRKEQDEEE KEEEDEESGD GDEDEDDPSS QKKPRVVWSP ELHKKFVGAV NLLGADRAVP 240 KKILELMNIE GITRENVASH LQKYRLYLKK ATPHDTNMVA GLGGGNDSYL RMRGIDGYAD 300 FCTSTRSGRI GSTTLPSYAP SGVFGRLNSP AGLNMRGINS SILIQPVQSH NTNSSWIPAN 360 QSSSLLHGVP TELNQSKLNN SAAGISQLNQ IDSTGFAAAS DFHDSRAINS SNQVSNHHLL 420 LQGNSQQTHN AGSFRNQSSV GSASLGNKNI TIGGSSNLLD YNRCSENWQS QAQLPKFPAS 480 SLPVCKSFNN DQLPLTSVTA YNQSPLIANS SVDFSSGNTI TVALEEARNV PRCQEDGLIG 540 NFIQPSSYAP RQSWAENKPD YSQNTGRPFN PVNSQVCSSR ALTNSASHNI NQSKTVCSNR 600 VDTSFVDQVY GASTSVARYP EAEKFSSDVQ VNSNDAYKLE KMRSQVGYVE GFGTLEDIMG 660 AIVKRV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-23 | 209 | 272 | 1 | 64 | ARR10-B |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g450070.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013463823.1 | 0.0 | two-component response regulator ARR12 | ||||
TrEMBL | A0A072V766 | 0.0 | A0A072V766_MEDTR; Two-component response regulator | ||||
STRING | GLYMA15G24770.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-101 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g450070.2 |
Entrez Gene | 25488302 |
Publications ? help Back to Top | |||
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