PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g438180.1 | ||||||||
Common Name | MTR_2g438180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 134aa MW: 15102.5 Da PI: 5.0438 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.9 | 2.2e-17 | 13 | 63 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g++ AeIrdp++ r +lg+f+taeeAa+a++ + +l+g Medtr2g438180.1 13 RYRGVRRRP-WGKYGAEIRDPTKpT---GRQWLGTFDTAEEAARAYDCEAIRLRG 63 6********.**********97744...688********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.288 | 13 | 71 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.02E-22 | 13 | 73 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.25E-29 | 13 | 72 | No hit | No description |
SMART | SM00380 | 3.8E-28 | 13 | 77 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-29 | 13 | 73 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.8E-10 | 13 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-11 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-11 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MEDTNKKGEE EVRYRGVRRR PWGKYGAEIR DPTKPTGRQW LGTFDTAEEA ARAYDCEAIR 60 LRGALAILNF PDEYFFHLSS LSSASSSSPS TNDNANASSS STQHKDVIEF EYLDNKVLED 120 LLGSSKEYNE RKQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-30 | 8 | 117 | 9 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g438180.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013463356.1 | 1e-95 | ethylene-responsive transcription factor ERF098 | ||||
Swissprot | Q9LTC5 | 1e-36 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A072V5V2 | 3e-94 | A0A072V5V2_MEDTR; Ethylene response factor | ||||
STRING | XP_004487930.1 | 5e-61 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 4e-29 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g438180.1 |
Entrez Gene | 25488228 |
Publications ? help Back to Top | |||
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