PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g435590.1
Common NameMTR_2g435590
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 260aa    MW: 28568.1 Da    PI: 4.7448
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g435590.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.4e-2095144255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       y+G+r+++ +g+W+AeIrdp     +  r++lg+f taeeAa+a++ a+k+++g
  Medtr2g435590.1  95 VYRGIRQRP-WGKWAAEIRDPQ----QgVRVWLGTFSTAEEAARAYDTAAKRIRG 144
                      69*******.**********94....25************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.3E-3395153IPR001471AP2/ERF domain
PfamPF008471.5E-1395144IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2295153IPR016177DNA-binding domain
SMARTSM003805.7E-3795158IPR001471AP2/ERF domain
PROSITE profilePS5103224.2595152IPR001471AP2/ERF domain
CDDcd000181.05E-3396154No hitNo description
PRINTSPR003676.8E-1296107IPR001471AP2/ERF domain
PRINTSPR003676.8E-12118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MCGGAIISDF IGVKRDRDLW FELDPSVDLL GLGGAAAAAA FNTPSSKELP PLSFEKFFSS  60
DNKVVSCDNV EKKQSLVTVE KGKKSTGGKR ARKNVYRGIR QRPWGKWAAE IRDPQQGVRV  120
WLGTFSTAEE AARAYDTAAK RIRGDKAKLN FPDTPAVTAP PAKKQCVSSD QASSQASSES  180
AGSGFELDEE MEIKQKMSDL EWILGLDSDI PQAQAPTQVE AQPEPEPVPF TMPADWDSIF  240
MDFWTSEDMV DPIRHLFYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2291152163ATERF1
3gcc_A3e-2291152163ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.155170.0glandular trichome| root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g435590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1366480.0BT136648.1 Medicago truncatula clone JCVI-FLMt-13A19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013463172.10.0ethylene-responsive transcription factor ERF071
TrEMBLA0A072V5S60.0A0A072V5S6_MEDTR; Ethylene response factor
STRINGXP_004487821.11e-107(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48923353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-33ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]