PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g435590.1 | ||||||||
Common Name | MTR_2g435590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 260aa MW: 28568.1 Da PI: 4.7448 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.9 | 3.4e-20 | 95 | 144 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp + r++lg+f taeeAa+a++ a+k+++g Medtr2g435590.1 95 VYRGIRQRP-WGKWAAEIRDPQ----QgVRVWLGTFSTAEEAARAYDTAAKRIRG 144 69*******.**********94....25************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.3E-33 | 95 | 153 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-13 | 95 | 144 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-22 | 95 | 153 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.7E-37 | 95 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.25 | 95 | 152 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.05E-33 | 96 | 154 | No hit | No description |
PRINTS | PR00367 | 6.8E-12 | 96 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-12 | 118 | 134 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008219 | Biological Process | cell death | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MCGGAIISDF IGVKRDRDLW FELDPSVDLL GLGGAAAAAA FNTPSSKELP PLSFEKFFSS 60 DNKVVSCDNV EKKQSLVTVE KGKKSTGGKR ARKNVYRGIR QRPWGKWAAE IRDPQQGVRV 120 WLGTFSTAEE AARAYDTAAK RIRGDKAKLN FPDTPAVTAP PAKKQCVSSD QASSQASSES 180 AGSGFELDEE MEIKQKMSDL EWILGLDSDI PQAQAPTQVE AQPEPEPVPF TMPADWDSIF 240 MDFWTSEDMV DPIRHLFYN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-22 | 91 | 152 | 1 | 63 | ATERF1 |
3gcc_A | 3e-22 | 91 | 152 | 1 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.15517 | 0.0 | glandular trichome| root| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g435590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT136648 | 0.0 | BT136648.1 Medicago truncatula clone JCVI-FLMt-13A19 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013463172.1 | 0.0 | ethylene-responsive transcription factor ERF071 | ||||
TrEMBL | A0A072V5S6 | 0.0 | A0A072V5S6_MEDTR; Ethylene response factor | ||||
STRING | XP_004487821.1 | 1e-107 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4892 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 2e-33 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g435590.1 |
Entrez Gene | 25488059 |
Publications ? help Back to Top | |||
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