PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g105380.1
Common NameMTR_080s0051, MTR_2g105380
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 368aa    MW: 40707.8 Da    PI: 4.6189
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g105380.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-19116165255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  Medtr2g105380.1 116 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 165
                      69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.8E-32116175IPR001471AP2/ERF domain
SMARTSM003804.6E-38116179IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-22116174IPR016177DNA-binding domain
CDDcd000181.44E-32116174No hitNo description
PROSITE profilePS5103224.092116173IPR001471AP2/ERF domain
PRINTSPR003671.1E-11117128IPR001471AP2/ERF domain
PfamPF008478.1E-12117165IPR001471AP2/ERF domain
PRINTSPR003671.1E-11139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MCGGAIISDF ISTAAVVGGS RRVTADMLWP NLRKSSSRKP FFLDNDFEAE FREFKDDSDL  60
DDDDEGLLVG AKCFTFGSTN NKSSNSFVRG SSAAKVVASK SNEQGEKELK RKRKNQYRGI  120
RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE EAARAYDAEA RRIRGKKAKV NFPEEAPNAS  180
SKRLKTNSET QLLDKNLNSF KCENIENYYS PVNQVEQRPL VNAQCANVGP FAGNGVQLAS  240
SDVTAYFSSE YSSNSFDYPD LCWGEQGPKT PEISSVFSAP IEGESQKNLQ SDNSQDMLPM  300
QNDSAKTHSE ELADIESQLK FFENSFDDNW SDASLAALLS EDTTQDCGNT VDLWSFDDLP  360
SIAGGVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21116173260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A4e-211151751374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.258290.0leaf| pod| root| seed
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g105380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1479280.0BT147928.1 Medicago truncatula clone JCVI-FLMt-16H13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465629.10.0ethylene-responsive transcription factor RAP2-2
TrEMBLG7ZYZ60.0G7ZYZ6_MEDTR; Ethylene response factor
STRINGAES844340.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48083252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.22e-55related to AP2 12
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]