PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g104490.1
Common NameMTR_2g104490
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 314aa    MW: 35291.9 Da    PI: 5.1592
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g104490.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-08138183555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er+RR ++ ++f  L   +P +     kK++K  iL +A+ Y+k Lq
  Medtr2g104490.1 138 HIMAERKRRLELSQKFIALSATIPGL-----KKMDKNYILGEAISYVKLLQ 183
                      899***********************.....9****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.084133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-15136199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.60E-8138187No hitNo description
PfamPF000104.0E-6138183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-14138199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-9139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEESWEHWPL HSELGDVEVL LGQYCHQTSA DDEEEFLRDI ILQQPVTYSG SISSSNEMDG  60
SDCSKKKLHP SSSPFTPRTF ILSFDKSTII PATTTPESEE VSIPKSRSNN NKRSLEPKAK  120
ASNQTGKKSR SGSQYLDHIM AERKRRLELS QKFIALSATI PGLKKMDKNY ILGEAISYVK  180
LLQERVKELE DQNKNSKEST IILKKTDMCV SEDTTSNSDQ DCCKSPLFDV KARIMENEVL  240
IQMHCEKEND IEIKIYNVLE NLDLFVTASS VLAFGTSTLG FTIVAQMGEG YKTTVNDLVK  300
TLWQVLNSKT DPF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141146ERKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g104490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597966.10.0transcription factor bHLH18
TrEMBLG7IMA70.0G7IMA7_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES682170.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131101230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-39bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]