PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr2g103290.1 | ||||||||
Common Name | MTR_2g103290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 182aa MW: 20367.9 Da PI: 9.1381 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.9 | 3.2e-07 | 15 | 39 | 2 | 26 |
-S---SGGGGTS--TTTT.T-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGd.rCkFaHg 26 kt lCr+f++ GtC+ + +C++aHg Medtr2g103290.1 15 KTQLCRRFMQ-GTCPLVApQCNYAHG 39 89********.*****855******9 PP | |||||||
2 | zf-CCCH | 25.4 | 2.4e-08 | 49 | 71 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +lCr f+ t +C+yG++C+F H Medtr2g103290.1 49 PRLCRMFMHTRHCSYGNNCRFLH 71 69********************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 7.6E-11 | 9 | 45 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-6 | 10 | 45 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0011 | 13 | 40 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.31 | 13 | 41 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.2E-5 | 15 | 39 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.032 | 46 | 73 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.929 | 46 | 74 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 49 | 72 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-6 | 49 | 71 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-7 | 50 | 71 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 182 aa Download sequence Send to blast |
MDSEAETSQT HMRIKTQLCR RFMQGTCPLV APQCNYAHGY HDLRTATGPR LCRMFMHTRH 60 CSYGNNCRFL HATPPLPLHH VHPQQQQHEN INFSFPQPQP GIMQNTECRI MQTSAAATTN 120 GHSSAQNNTT QSQTFSSTPA RNTSAITVAT TSLHKNGPYA GKSLSDINTM QRVIRLYADW 180 I* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr2g103290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC148340 | 1e-164 | AC148340.3 Medicago truncatula chromosome 2 clone mth2-22d10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003597853.1 | 1e-134 | mRNA decay activator protein ZFP36L2 | ||||
TrEMBL | G7IUS5 | 1e-133 | G7IUS5_MEDTR; Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||
STRING | AES68104 | 1e-134 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15954 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68200.1 | 2e-07 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr2g103290.1 |
Entrez Gene | 11433075 |
Publications ? help Back to Top | |||
---|---|---|---|
|