PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g102227.1
Common NameMTR_2g102227
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Trihelix
Protein Properties Length: 497aa    MW: 57303.7 Da    PI: 4.2501
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g102227.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.51.6e-13273358186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +Wt++e+ +L++a  ++  + rr++l+   W++v++k+    ++er+ +qC+++++ l+k+ykk k   ++   +  ++++yf++++
  Medtr2g102227.1 273 EWTEKETFVLLDAWGDRFLQHRRKSLRSEEWQQVAEKVsVVSKVERTGTQCRNRLDTLKKKYKKDKIKFQDM-GGGDRKWVYFQKMD 358
                      5*************************************667899********************99888886.566679*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-4238247IPR009057Homeodomain-like
PfamPF138371.8E-20273360No hitNo description
PROSITE profilePS500906.202274331IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-4299340IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MDDIDDDAIA RYPSNQYGVG YPNNQGYGYL KHPLRNSSYS HPAANESTRD YDHVDDEDRL  60
GGNDDEDRLG GDDDEDRLGG DDDDDDDVVD EDRLGGDDDV VVHDDDDDDQ HSLKQADDDD  120
SDGGGDENDD NDRLSEEYGY LKDSARNSPY SQPFVNEGNN DEDEEDEERL VEEDDDVVDI  180
DQNNNGQLSL KHADEEDSND EDGDRDENID NNDGGNDNKQ ESYAMMNEDE LEWRPKKQKL  240
KSLMSTYEFA ARVPTPSAAA AKRSFGVRNS LTEWTEKETF VLLDAWGDRF LQHRRKSLRS  300
EEWQQVAEKV SVVSKVERTG TQCRNRLDTL KKKYKKDKIK FQDMGGGDRK WVYFQKMDKL  360
MSSPPQQARL SCRSNSRERI FMKPGVYVNH ANEMDDMKKD SPPENTEYVR VEGFEGPRPK  420
KRRKGRGSDE ASSFKLLADS IQNFGKIYEK IENSKRQQMM ELEKMRMDFL NDLEAQKRQI  480
FERLQSEILK IEQRDD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1419423KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g102227.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465529.10.0stress response protein NST1
RefseqXP_024632983.10.0stress response protein NST1
TrEMBLA0A072VC010.0A0A072VC01_MEDTR; Myb/SANT-like DNA-binding domain protein
STRINGGLYMA13G43651.21e-127(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.15e-46Trihelix family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]