PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr2g101520.1

Common Name

MTR_2g101520

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

bHLH

Protein Properties

Length: 330aa MW: 36320.4 Da PI: 6.6283

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr2g101520.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.9	0.00042	191	229	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Medtr2g101520.1 191 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 229 6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.439	179	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-7	189	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.95E-6	189	233	No hit	No description
SuperFamily	SSF47459	3.14E-10	189	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MMAGNPNWWS MHPSSLNIPP QYMLGSSSIP FNSLTENNAE VPPQSWSQLL FTGLPGEEER 60 LGFNHFQPKN SENWDVQIMN PSSRVPFMDI IKHEVSQGEN FYGQQGHHHE EFHANSGSLG 120 SSWSHMVPVS SPSSHITSLS SDNILDFTYN KVDHSKNQLP DQISECNSST TGVNKKARVQ 180 PSSSQPPLKV RKEKLGDRIT ALHQLVSPFG KTDTASVLLE AIGYIRFLQS QIEALSTPYL 240 DTAASKNMMR NQHSVHVERN SVFPEDPGQL LDDTGLKRKG APIPNQNAEG NKAKDLRSRG 300 LCLVPVSCTQ HVGSENGADY WAPAFGSGF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.13703	0.0	leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr2g101520.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT149545	0.0	BT149545.1 Medicago truncatula clone JCVI-FLMt-16P10 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003597717.2	0.0	transcription factor bHLH68
Refseq	XP_024633254.1	0.0	transcription factor bHLH68
Swissprot	Q8S3D1	3e-71	BH068_ARATH; Transcription factor bHLH68
TrEMBL	G7IUP4	0.0	G7IUP4_MEDTR; BHLH transcription factor-like protein
STRING	AES67968	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1223	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	7e-73	bHLH family protein

Link Out ? help Back to Top
Phytozome	Medtr2g101520.1
Entrez Gene	11425782

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]