PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g100680.1
Common NameMTR_2g100680
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HSF
Protein Properties Length: 455aa    MW: 51221.4 Da    PI: 6.8907
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g100680.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1124e-35321222101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      F++k+y++++d++++++isws  +nsf+v+++ efa  +Lp+yFkh+nfaSF+RQLn+YgF+k ++e+         weF++++F k++k+ll+
  Medtr2g100680.1  32 FVQKTYDMVDDSATDDIISWSPMNNSFIVWNPPEFAGVLLPTYFKHNNFASFIRQLNTYGFRKKDSER---------WEFANEEFIKDQKHLLK 116
                      9********************999***************************************99988.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +i+r+k
  Medtr2g100680.1 117 NIHRRK 122
                      ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-5728121IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-3728121IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.67E-3428121IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.6E-183255IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3032121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-187082IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-188395IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MPTTTGLPHD KMDGVPLSSF GGGRNGGNPT PFVQKTYDMV DDSATDDIIS WSPMNNSFIV  60
WNPPEFAGVL LPTYFKHNNF ASFIRQLNTY GFRKKDSERW EFANEEFIKD QKHLLKNIHR  120
RKPIHSHSHP PGSAVDPERA AFEKEIEKLS QEKNYLESSV LNYKHHQSTA KFQLDNFQQL  180
LDGMEIRQTR VLNYFEKALQ NPTFVDRLKR KIESMDAAAC NKKRRLPHVD HVQPVAAGSL  240
IDNHSNFSLG FENVFHQNFL NKLRLELSPS VSDMNLVSGS THVSTENEES LQKNLSEGEL  300
TEMQTRTDVA FAPETLELAD PGASFAFNMD SCLSRRATTT KSPNLQSLEP SSKEGDSYIS  360
RQLNLTLASC TLEFNRNSYS ARSPQIDCQK IGNMAESRVN ASGKESEIGV YSKRNLANKV  420
LNLASPQEVS GSIQVKPAAP KRVNDLFWEQ FLTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-202112117129Heat shock factor protein 1
5d5v_B2e-202112117129Heat shock factor protein 1
5d5v_D2e-202112117129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208224KRKIESMDAAACNKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g100680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1253900.0AC125390.32 Medicago truncatula clone mth2-17c11, complete sequence.
GenBankAC1874660.0AC187466.2 Medicago truncatula chromosome 2 BAC clone mth2-69p21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597660.20.0heat stress transcription factor A-5 isoform X2
TrEMBLG7IHY20.0G7IHY2_MEDTR; Heat shock transcription factor A8
STRINGAES679110.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-125HSF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]