PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g100020.1 | ||||||||
Common Name | MTR_2g100020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 278aa MW: 31723.1 Da PI: 5.4415 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.4 | 3.3e-40 | 19 | 119 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rrkC ++C+lapyfp++++k+f n+hklFG+ ++++++k++p++ r+++mss+++++++ra dPv G++++i++lq+q+e +ael Medtr2g100020.1 19 ACAACKYQRRKCGTSCILAPYFPHDRQKQFLNAHKLFGVGKITNMIKNVPPHLRDHTMSSIIFQSDMRAMDPVGGCYRFIQQLQSQYEFYQAEL 112 7********************************************************************************************* PP DUF260 95 allkeel 101 +l+++++ Medtr2g100020.1 113 HLTRQQI 119 ***9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.047 | 18 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.5E-36 | 19 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MNNNNNNIIS RNGNGTTQAC AACKYQRRKC GTSCILAPYF PHDRQKQFLN AHKLFGVGKI 60 TNMIKNVPPH LRDHTMSSII FQSDMRAMDP VGGCYRFIQQ LQSQYEFYQA ELHLTRQQIS 120 ICKATQSQQH QQQFAAVSNH HYNDMHVINH NNNEDNDAAL NIINHFNQQH FVDDQLNMNM 180 LPQQQLQLQQ QYVVDDVCIN PNYVPLQEDL NSWANNINIP LSPLTLEGNN KEEDGEEDQE 240 RVGDDQGNDQ KPVFDLINEM NSLDTNSSSI DPGHQVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-25 | 15 | 112 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-25 | 15 | 112 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g100020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC155896 | 0.0 | AC155896.2 Medicago truncatula chromosome 2 clone mth2-85c24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024632954.1 | 0.0 | LOB domain-containing protein 7 | ||||
TrEMBL | G7IUH8 | 0.0 | G7IUH8_MEDTR; LOB domain protein | ||||
STRING | AES67850 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4133 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 8e-42 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g100020.1 |
Entrez Gene | 11423276 |
Publications ? help Back to Top | |||
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