PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g099490.2
Common NameMTR_2g099490
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NF-YA
Protein Properties Length: 332aa    MW: 36983.1 Da    PI: 8.4758
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g099490.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1002.4e-31171227158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVN+KQy++I++RRq Rakle+++kl +k rkpylheSRh hAl+R+Rg gGrF
  Medtr2g099490.2 171 EEPIYVNSKQYHAIMRRRQCRAKLEAHNKL-IKDRKPYLHESRHVHALKRARGAGGRF 227
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.3E-37169230IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.393170230IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.8E-26172227IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.5E-23173195IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860175195IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.5E-23204227IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MKCLCEKDSA HSTPHHIFGC PSWGTSSESQ VQQTSMSKGL SFKVEALPQE CHNSKALSFQ  60
FQEQDSSSTQ STGSSQSGQI PFQHCSSTGS TFKRTEENNM GCLIGSSSIG SPNLTVHPPL  120
MDHSQSLAHV ALHYADPGYN GLLSASYGQQ YKGQLMETAS VRIPLPSDMA EEPIYVNSKQ  180
YHAIMRRRQC RAKLEAHNKL IKDRKPYLHE SRHVHALKRA RGAGGRFLNA KKLQESKLDS  240
PNHGQNVSTG YTCLNLNGNM SEPKMHDQVE NYRDDASDVA YGSNRNEMFQ QQQELEFRLC  300
SYPSSQTGRN MQDYTSDKNV GANQRRLSVR M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-21171241272NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.259110.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g099490.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182690.0JQ918269.1 Medicago truncatula nuclear transcription factor Y subunit A4 (NF-YA4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024633082.10.0nuclear transcription factor Y subunit A-8 isoform X2
TrEMBLG7IS220.0G7IS22_MEDTR; CCAAT-binding transcription factor
STRINGAES678010.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.42e-50nuclear factor Y, subunit A8
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]