PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g099350.2
Common NameMTR_2g099350
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Nin-like
Protein Properties Length: 965aa    MW: 106553 Da    PI: 5.2997
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g099350.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK90.81.1e-28604654252
           RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      ek++sl++l++yFs+++kdAAk++gvc+T+LKriCR++GI+RWP+Rki+++
  Medtr2g099350.2 604 EKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRHHGISRWPSRKINKV 654
                      89***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.824586674IPR003035RWP-RK domain
PfamPF020428.4E-26606654IPR003035RWP-RK domain
SuperFamilySSF542773.64E-22855948No hitNo description
Gene3DG3DSA:3.10.20.2401.1E-22861943No hitNo description
PROSITE profilePS5174520.499864946IPR000270PB1 domain
SMARTSM006661.0E-21864946IPR000270PB1 domain
PfamPF005645.1E-16866944IPR000270PB1 domain
CDDcd064072.33E-31867945No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 965 aa     Download sequence    Send to blast
MEYPYYSKGG GIGYWQSPGT QFEGPTSLDG GINNLVSEDM PNSFSELMNF DTYAGLCSGP  60
STTDQIMTNE LPSLASALYQ LPDGFNPVEP NSGQFYGGNY NNFESSPIFG EKIVCQQMDT  120
LLGFLDNSND ANNSSSRQKF DDPSQHVNAF DMGNYVIARP QALISRPPAL SLDERMLKAL  180
SFFKESAGGG ILAQVWVPIK HDGQVLLSTS EQPYLLDQML AGYREVSRTF RFSTEGKPGC  240
IPGLPGRVFI SKVPEWTSNV GYYNPKEYLR AEHARNHEVR GSIAFPIFDL HSGLPCSAVL  300
ELVTTKEKLD FDRELEIICR SLQLVNLRTT ASSRLLPECL STNKRAALTE IVDVLRSVCY  360
AHRLPLALTW IPCFYTDGTR DETTRIQIKE GNSSSREKNI LCIEESACYI TDRVMEGFVH  420
ACIEHPLEEG NGVAGKALQS NHPFFYSDVK TYDISEYPLV HHARKFNLGA AVAIRLRSIY  480
TNNDDYILEF FLPINMKGSS EQQLLLDNLS GTMQKICKSL RTVSGAEISG MESSVVGFGK  540
KNVPSFPSTS TRNSQVSLIN EKDGSVQKLS LDTSNLRNNG NKPSCNQENN GSRRRVEKKR  600
NTSEKNVSLS VLQQYFSGSL KDAAKSIGVC PTTLKRICRH HGISRWPSRK INKVNRSLKK  660
IQTVLDSVQG VEGGLKFDPS SGAFVAGGTT TEEINENKSL LFPERSTTQD SEPMSQNAVS  720
VPSEDENLEN KWEGKLKETN TCSIDCSEDS KSFAMDDCPE QAYIGSVLAK CDEWVLNNGG  780
LREEKRKHST IGQRTSSFAV DEMDTGADGD DDDVVEHNHP TSSSLTDSSN GSGSMIHGSS  840
SGYQNFKNQK PSKGKSTIVD SGSKIVVKAT YGEDTIRFKF DPSTGYYKLY EEVAARFKLQ  900
DGSFQLKYLD DEEEWVMLVN DSDLQVCLEI LNDMGTHNAR FLVRDIPCTF GSSGSSSCYL  960
GGSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g099350.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1463080.0AC146308.2 Medicago truncatula clone mth2-10a12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597538.20.0protein NLP9
RefseqXP_024632583.10.0protein NLP9
TrEMBLG7IS090.0G7IS09_MEDTR; Plant regulator RWP-RK family protein
STRINGAES677890.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43500.20.0Nin-like family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]