PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g098880.4 | ||||||||
Common Name | MTR_2g098880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | FAR1 | ||||||||
Protein Properties | Length: 253aa MW: 29300.7 Da PI: 6.1443 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 82.3 | 8.5e-26 | 76 | 165 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+ Y++++GF+vr++++++s+ n+e + ++fvCskeg+r+++ +++++ + + tr gC+a++++ ++++gkw+vtk+++eH+H+l+ Medtr2g098880.4 76 FYDGYGRRIGFTVRIHHNRRSRVNNELIGQDFVCSKEGFRAKKYVHRKDR-VlpPPPATREGCQAMIRLALRDEGKWVVTKFVKEHTHKLM 165 9*****************************************99883333.2448899*******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-22 | 76 | 165 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MMDHQSGQGF DSDGSDFDVL AEISEKHEKV EDEFTNSLEL CTGEDKEFVE QPVADSDTLE 60 PFIGMQFNSR EEARGFYDGY GRRIGFTVRI HHNRRSRVNN ELIGQDFVCS KEGFRAKKYV 120 HRKDRVLPPP PATREGCQAM IRLALRDEGK WVVTKFVKEH THKLMSPGEV PWRGSGKHLV 180 SEDEKDRRIR ELSLELHNER QKYKRRCAAY EEQLNTILND LEKHTEHISK KVADVVQNIR 240 EIEEEKSDSD GR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g098880.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC146574 | 0.0 | AC146574.6 Medicago truncatula clone mth2-145j21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003597516.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_024632575.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A072VD01 | 0.0 | A0A072VD01_MEDTR; FAR-RED impaired response-like protein | ||||
TrEMBL | G7IHU5 | 0.0 | G7IHU5_MEDTR; FAR-RED impaired response-like protein | ||||
STRING | AES67767 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-44 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g098880.4 |
Entrez Gene | 11435246 |
Publications ? help Back to Top | |||
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