PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g097910.1
Common NameMTR_2g097910
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 320aa    MW: 36585.9 Da    PI: 5.7014
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g097910.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.2e-152269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++  + G g+W+ +ar  g+ R++k+c++rw +yl
  Medtr2g097910.1 22 KGLWSPEEDEKLMNYMVRNGQGCWSDVARNAGLERCGKSCRLRWINYL 69
                     678*******************************************97 PP
2Myb_DNA-binding50.83.9e-1675118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++t+E+el+++ + +lG++ W+ Ia++++ gRt++++k++w++
  Medtr2g097910.1  75 RGAFSTQEEELIIHFHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 118
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-231472IPR009057Homeodomain-like
PROSITE profilePS5129417.6261769IPR017930Myb domain
SuperFamilySSF466899.77E-2820116IPR009057Homeodomain-like
SMARTSM007172.2E-112171IPR001005SANT/Myb domain
PfamPF002498.0E-142269IPR001005SANT/Myb domain
CDDcd001676.22E-92569No hitNo description
PROSITE profilePS5129424.45670124IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2473125IPR009057Homeodomain-like
SMARTSM007176.8E-1574122IPR001005SANT/Myb domain
PfamPF002491.6E-1475118IPR001005SANT/Myb domain
CDDcd001676.16E-1077117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MRKPEICSTK NNININKKKL RKGLWSPEED EKLMNYMVRN GQGCWSDVAR NAGLERCGKS  60
CRLRWINYLR PDLKRGAFST QEEELIIHFH SLLGNRWSQI AARLPGRTDN EIKNFWNSTI  120
KKRLKNLSSS TSPNPSDESS PEPNKDFNIQ QGSYISIQHA NYNSYMSMPM FTSSSTSPSP  180
SILQNTIFNT MNIDTLPVMD HSGYFNNTVT TMPCFSSQNH EVEIKGSYLE NGVFGSVNIG  240
VEGDMENKCN IETNPNHSDY YFDDIKINNM LSNCNIIESN NNKIESRGEV VENLFQEQFN  300
LGEWDFEELM KDVSSFLFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27201245108B-MYB
1h8a_C3e-272012425128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g097910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1463300.0AC146330.33 Medicago truncatula clone mth2-7g7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597423.20.0transcription factor MYB46
TrEMBLG7IS010.0G7IS01_MEDTR; Myb transcription factor
STRINGAES676740.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.12e-69myb domain protein 46
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]