PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g097390.1 | ||||||||
Common Name | MTR_2g097390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | GRAS | ||||||||
Protein Properties | Length: 644aa MW: 73552.5 Da PI: 4.972 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 336.3 | 5.6e-103 | 272 | 640 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL+ cA+ +s +d ++a++lL+++++++sp+gd +qRla++f +AL+arla+++s++y+al+++++s ++ ++a++++s ++P+ k++ Medtr2g097390.1 272 LRTLLMLCAQSISCNDISNANQLLNQIKKHSSPTGDGTQRLAHFFGNALEARLAGTGSHVYRALSSKKKS---AADMVKAYQVYSSACPFEKLA 362 5789************************************************************999998...99******************* PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188 + N aIl+ +++ e +HiiDf++++G++W+ ++ L++R++gpp+lRiTg++ p+ s e+++etg rL++++++++vpfe+n +ak++e+ Medtr2g097390.1 363 IMFSNDAILNVAKETESLHIIDFGVGYGFKWLGFIYRLSKRSGGPPKLRITGIDLPN--SLERVNETGLRLSSYCKRFNVPFEYNG-IAKNWES 453 *******************************************************87..9**************************.7****** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpresee 281 +++++++++++E +aV +v++ ++l+de+v +e++r +vL+l+k+ +P++++++ + ++++ F++rf ea+ yysalfd+l +++ re+ Medtr2g097390.1 454 IKVQDFKIRKNEFVAVTCVFKFENLPDETVVSENPRGAVLDLIKKANPNIFIHSIVNGGYDAPFFVTRFKEAVFYYSALFDMLdYNNVEREDPF 547 ***********************************************************************************77899999*** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 r + E ++ g++i+nv+aceg +r+er et+++W++r + GF++++l++++ ++ k+ lr + + + e +++++++gWk+r L+ S+W Medtr2g097390.1 548 RLMFEVVFWGNDIMNVIACEGCDRVERPETYMHWHSRHMGNGFRSLKLDKQIINKLKCKLRDDAyNSDFLFEVNENWMLQGWKGRILFGSSCW 640 *************************************************************9887888************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.126 | 246 | 620 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.9E-100 | 272 | 640 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 644 aa Download sequence Send to blast |
MDKGVVDPLH EQSKSEFTST VLGFINKFLM EDDDSEEDYN MFQHHEHEVS STVLGSINQF 60 LMEEDFEKEY TQFQDSFALQ LTEKSFHDVI AHTPLPPPPP PTAVTAITTT LPSSIQHEYQ 120 QNYNFVDSPN FSDYSLSSDS TSSFELDPII DSYNYNYNPF LLPNTPPFSP NNFVSQSNST 180 IFPSFNNALS HEVLQTENFE EEHFLNVSQN GSEQVYVDDS GELSELFDKV LVLGTKFTKG 240 PLQNTSFQQN EELSNRFYGS RRQRSYEEVV DLRTLLMLCA QSISCNDISN ANQLLNQIKK 300 HSSPTGDGTQ RLAHFFGNAL EARLAGTGSH VYRALSSKKK SAADMVKAYQ VYSSACPFEK 360 LAIMFSNDAI LNVAKETESL HIIDFGVGYG FKWLGFIYRL SKRSGGPPKL RITGIDLPNS 420 LERVNETGLR LSSYCKRFNV PFEYNGIAKN WESIKVQDFK IRKNEFVAVT CVFKFENLPD 480 ETVVSENPRG AVLDLIKKAN PNIFIHSIVN GGYDAPFFVT RFKEAVFYYS ALFDMLDYNN 540 VEREDPFRLM FEVVFWGNDI MNVIACEGCD RVERPETYMH WHSRHMGNGF RSLKLDKQII 600 NKLKCKLRDD AYNSDFLFEV NENWMLQGWK GRILFGSSCW IPT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-46 | 261 | 642 | 8 | 380 | Protein SCARECROW |
5b3h_A | 2e-46 | 261 | 642 | 7 | 379 | Protein SCARECROW |
5b3h_D | 2e-46 | 261 | 642 | 7 | 379 | Protein SCARECROW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g097390.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003597371.2 | 0.0 | scarecrow-like protein 33 | ||||
Swissprot | Q9XE58 | 1e-163 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | G7IRU9 | 0.0 | G7IRU9_MEDTR; GRAS family transcription factor | ||||
STRING | AES67622 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-166 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g097390.1 |
Entrez Gene | 11408919 |
Publications ? help Back to Top | |||
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