PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g097350.1
Common NameMTR_2g097350
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 643aa    MW: 73409.7 Da    PI: 5.3296
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g097350.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3366.8e-1032716391373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL+ cA+ +s +d ++a++lL+++++++sp+gd +qRla++f +AL+arla+++s++y+al+++++s    ++ + a++++s ++P+ k++
  Medtr2g097350.1 271 LRTLLMLCAQSISCNDISNANQLLNQIKKHSSPTGDGTQRLAHFFGNALEARLAGTGSKIYRALSSKKKS---AADMARAHQVYSSACPFEKLA 361
                      5789************************************************************999998...99999**************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                       +  N+aI + +++ e +HiiDf++++G++Wp L+  L++R++gpp+l+iTg++ p+    e+++ tg rLa ++e++gvpfefn  +ak++e+
  Medtr2g097350.1 362 IMFSNNAIFNVAKETESLHIIDFGVGYGFKWPGLMLRLSKRSGGPPKLKITGIDLPN--LLERVNGTGLRLAAYCERFGVPFEFNG-IAKNWES 452
                      *******************************************************87..99*************************.7****** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpresee 281
                      +++e+++++++E +aVn+ ++ ++llde+v+ e++r +vL+l+k+ +P+++v +  +  ++++ F++rf ea+ +ys+lfd+l ++++ re+ +
  Medtr2g097350.1 453 IKVEDFKIRKNEFVAVNCYFKFENLLDETVAPENPRGAVLDLIKKANPNIFVQSIVNGCYDAPFFVTRFKEAVFHYSSLFDMLdNNNVEREDPN 546
                      ***********************************************************************************8899******* PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                      r + E+e+ g++i+nv+aceg +r+er et+++W+ r +  GFk+++l++++ ++ k+ lr  + +  +  e +++++++gWk+r L+  S+W
  Medtr2g097350.1 547 RLMFEEEFWGKDIMNVIACEGCDRVERPETYRQWHFRHMGNGFKSLKLDKQIIDKLKCKLRDDAyNSDFLFEVNENWMLQGWKGRILFGSSCW 639
                      *************************************************************9887888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.449245619IPR005202Transcription factor GRAS
PfamPF035142.3E-100271639IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MDKRIVDSHH EQSESEFSSP ILGYVSKFLM EDDDIEEDYN MFQHNEHDGS SNALGYINRF  60
LMEEDFEKEY TMFQDSFALQ LTEKSFHDVI VHTPLPPPPP IAAAAAAAAT TTTTTLPSSS  120
SSIHHQKNYK FVHSPDISDY SFSSGSTSSF ELEPIIETYN YNYNTFPLPN TLPIPPNFVS  180
QFDSTVFPSH EVIKTENFEE EHFLNVSQNE SEQVYVDDNS ELPELFDKLL VLGTKVKKGP  240
LQNTSFQQNY ELSNRFYGYR RQRSYEEVVD LRTLLMLCAQ SISCNDISNA NQLLNQIKKH  300
SSPTGDGTQR LAHFFGNALE ARLAGTGSKI YRALSSKKKS AADMARAHQV YSSACPFEKL  360
AIMFSNNAIF NVAKETESLH IIDFGVGYGF KWPGLMLRLS KRSGGPPKLK ITGIDLPNLL  420
ERVNGTGLRL AAYCERFGVP FEFNGIAKNW ESIKVEDFKI RKNEFVAVNC YFKFENLLDE  480
TVAPENPRGA VLDLIKKANP NIFVQSIVNG CYDAPFFVTR FKEAVFHYSS LFDMLDNNNV  540
EREDPNRLMF EEEFWGKDIM NVIACEGCDR VERPETYRQW HFRHMGNGFK SLKLDKQIID  600
KLKCKLRDDA YNSDFLFEVN ENWMLQGWKG RILFGSSCWI PA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-492606418380Protein SCARECROW
5b3h_A2e-492606417379Protein SCARECROW
5b3h_D2e-492606417379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g097350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597367.10.0scarecrow-like protein 33
TrEMBLG7IHQ50.0G7IHQ5_MEDTR; GRAS family transcription factor
STRINGAES676180.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-151SCARECROW-like 14
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]