PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g097310.1
Common NameMTR_2g097310
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 641aa    MW: 73256.1 Da    PI: 5.9837
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g097310.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS341.61.3e-1042696371373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL+ cA+ +s +d ++a++lL+++++++sp+gd +qRla +f +AL+arla+++s++y+al+++++s    ++ + a++++s ++P+ k++
  Medtr2g097310.1 269 LRTLLMLCAQSISCNDISNANQLLNQIKKHSSPTGDGTQRLAYFFGNALEARLAGTGSKIYRALSSKKKS---AADMIRAYQVYSSACPFEKLA 359
                      5789************************************************************999998...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                       +  N+aIl+++++ e +HiiDf++++G++Wpa+++ L++R++gpp+lRiTg++ p+  s e+++etg rLa+++++++vpfe+n  +ak++e+
  Medtr2g097310.1 360 IIFSNNAILNEAKETESLHIIDFGVGYGFKWPAFIHRLSKRSGGPPKLRITGIDLPN--SLERVKETGLRLASYCKRFNVPFEYNG-IAKNWES 450
                      *******************************************************87..9**************************.7****** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpresee 281
                      +++e+++++++E +aVn+ ++ ++llde+v +e+++ +vL+l+++++P++++++  +  ++++ F++rf ea+ +ysalfd+l ++++ re+  
  Medtr2g097310.1 451 IKVEDFNIRKNEFVAVNCLFKFENLLDETVVSENPKGAVLDLIRKTNPNIFIHSIVNGGYDEPFFVTRFKEAVFHYSALFDMLdNNNVEREDPV 544
                      ***********************************************************************************8899******* PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                      r + E  + g++i+nv+aceg +r+er et+++W++r    GF++++l++++ ++ k  lr+ + +  +  e +++++++gWk+r L+  S+W
  Medtr2g097310.1 545 RLMFEGDVWGKDIMNVIACEGCDRVERPETYRHWHSRHIGNGFRSLKLNKQIIDKLKGRLRNDAyNSDFLFEVNENWMLQGWKGRILFGSSCW 637
                      **********************************************************9999887888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.783243617IPR005202Transcription factor GRAS
PfamPF035144.6E-102269637IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MDKRVVGPHH EHSESEFSST ISTILGFINK FLMEDDDIEE DYNMFQHHEH EESSTVLGSI  60
NQFLMEEDFE KEYTMFQDSF ALQLTEKSFH DVIVHTPPAA AGLPYSSSSS SSYSYSSSIK  120
HRQNYNYVHS PNFSDYSFSS GSTSSFEPDP IIDSYNYNNN PFLLPTTLPF PPNNFVSQSN  180
PTLFPSFNNA LSHEVFKTEN FEEEHFLNVS EQVKVDDNSE LSELFDKLLL GTKVTKGPHQ  240
NTSFQQNEEL SNRFGGFRRK RSYEEVVDLR TLLMLCAQSI SCNDISNANQ LLNQIKKHSS  300
PTGDGTQRLA YFFGNALEAR LAGTGSKIYR ALSSKKKSAA DMIRAYQVYS SACPFEKLAI  360
IFSNNAILNE AKETESLHII DFGVGYGFKW PAFIHRLSKR SGGPPKLRIT GIDLPNSLER  420
VKETGLRLAS YCKRFNVPFE YNGIAKNWES IKVEDFNIRK NEFVAVNCLF KFENLLDETV  480
VSENPKGAVL DLIRKTNPNI FIHSIVNGGY DEPFFVTRFK EAVFHYSALF DMLDNNNVER  540
EDPVRLMFEG DVWGKDIMNV IACEGCDRVE RPETYRHWHS RHIGNGFRSL KLNKQIIDKL  600
KGRLRNDAYN SDFLFEVNEN WMLQGWKGRI LFGSSCWVPA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-492576396379Protein SCARECROW
5b3h_D1e-492576396379Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g097310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597365.10.0scarecrow-like protein 33
SwissprotQ9XE581e-166SCL14_ARATH; Scarecrow-like protein 14
TrEMBLG7IHQ30.0G7IHQ3_MEDTR; GRAS family transcription factor
STRINGAES676160.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-167SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]