PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g096740.2
Common NameMTR_2g096740
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Dof
Protein Properties Length: 304aa    MW: 33471 Da    PI: 9.5533
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g096740.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.81.1e-3874133362
           zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                      e++lkcprC+stntkfCyynny+lsqPr+fCk+CrryWt+GGalrnvPvGgg+r++kk++
  Medtr2g096740.2  74 ETNLKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRSKKTK 133
                      6789****************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2641128IPR003851Zinc finger, Dof-type
PfamPF027011.0E-3276131IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.70277131IPR003851Zinc finger, Dof-type
PROSITE patternPS01361079115IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MVFSSIPSYL DPLNWQQQPN QHQLLPPLSS SQVHGAGSII RPGSIPDQAQ AQAAHEVHTG  60
QVQTHQAKLP PPSETNLKCP RCESTNTKFC YYNNYNLSQP RHFCKTCRRY WTRGGALRNV  120
PVGGGCRRSK KTKKSNTSST PSKSPISNSN DKDYSTSASA IHSTSTPLGE FLHPTNRPNY  180
MTSLQNLNRF GVGNMFQIGD YSSTTGGGEG GVVDQWRFQQ FPFMNNGFDS STSNVSFPFQ  240
SEIVEPTTTS RVTTLMPASV KSEHNGGFNL LRSPMNMSEN NNHYNNSWND FHGLASSSAS  300
RLL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.193960.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g096740.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0518370.0BT051837.1 Medicago truncatula clone MTYF5_F6_F7_F81G-N-10 unknown mRNA.
GenBankBT1358550.0BT135855.1 Medicago truncatula clone JCVI-FLMt-11L4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465384.10.0dof zinc finger protein DOF2.4 isoform X1
TrEMBLA0A072VBP40.0A0A072VBP4_MEDTR; Dof domain zinc finger protein
STRINGXP_004487016.11e-104(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.12e-34DNA binding with one finger 2.4
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]