PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g096740.1 | ||||||||
Common Name | MTR_2g096740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | Dof | ||||||||
Protein Properties | Length: 289aa MW: 31815.2 Da PI: 9.5532 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.9 | 1.1e-38 | 59 | 118 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e++lkcprC+stntkfCyynny+lsqPr+fCk+CrryWt+GGalrnvPvGgg+r++kk++ Medtr2g096740.1 59 ETNLKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRSKKTK 118 6789****************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-26 | 26 | 113 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.3E-33 | 61 | 116 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.702 | 62 | 116 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 64 | 100 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MVFSSIPSYL DPLNWQQVHG AGSIIRPGSI PDQAQAQAAH EVHTGQVQTH QAKLPPPSET 60 NLKCPRCEST NTKFCYYNNY NLSQPRHFCK TCRRYWTRGG ALRNVPVGGG CRRSKKTKKS 120 NTSSTPSKSP ISNSNDKDYS TSASAIHSTS TPLGEFLHPT NRPNYMTSLQ NLNRFGVGNM 180 FQIGDYSSTT GGGEGGVVDQ WRFQQFPFMN NGFDSSTSNV SFPFQSEIVE PTTTSRVTTL 240 MPASVKSEHN GGFNLLRSPM NMSENNNHYN NSWNDFHGLA SSSASRLL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.19396 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g096740.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT051837 | 0.0 | BT051837.1 Medicago truncatula clone MTYF5_F6_F7_F81G-N-10 unknown mRNA. | |||
GenBank | BT135855 | 0.0 | BT135855.1 Medicago truncatula clone JCVI-FLMt-11L4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013465383.1 | 0.0 | dof zinc finger protein DOF2.4 isoform X2 | ||||
TrEMBL | A0A072VDB8 | 0.0 | A0A072VDB8_MEDTR; Dof domain zinc finger protein | ||||
STRING | XP_004487016.1 | 1e-99 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37590.1 | 2e-37 | DNA binding with one finger 2.4 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g096740.1 |
Entrez Gene | 25487871 |
Publications ? help Back to Top | |||
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