PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g095050.1
Common NameMTR_2g095050
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TALE
Protein Properties Length: 617aa    MW: 69513.9 Da    PI: 7.1631
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g095050.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.9e-094594961954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +++  LA+++gL+ +qV++WF N R +
  Medtr2g095050.1 459 FEHflHPYPTDTDKHLLATQTGLSRNQVSNWFINARVR 496
                      665559******************************87 PP

2BELL106.61.6e-34314382472
             BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      + q+ kakL+ ++eeV+krYkqy++q+q+v ssFe vagl+sa+pY+ lAlk++S+hF+cL +ai++q+
  Medtr2g095050.1 314 DYQQNKAKLMFMQEEVNKRYKQYHQQMQMVFSSFESVAGLNSATPYIDLALKTVSKHFKCLNNAISNQL 382
                      67999*************************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.7E-43243380IPR006563POX domain
PfamPF075263.6E-38248379IPR006563POX domain
PROSITE profilePS5007112.115437500IPR001356Homeobox domain
SMARTSM003897.1E-9440504IPR001356Homeobox domain
CDDcd000868.75E-12440501No hitNo description
SuperFamilySSF466895.56E-17441505IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-27443504IPR009057Homeodomain-like
PfamPF059201.6E-17457496IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MQDLVQVRNI RNANYKLDEP VYSSTEMLNF LTTTTSNPLE YQELGAASEP SRLMMQHYHQ  60
QHYGSLPHSE LSDFGNWRNS VPAPHQLTDQ YWLLNNANNS LSYVYGAEKQ LGLMHQNQNN  120
SLQDVVKSIT SNRSDSEMAS LMHHNGQGIC VGNASELQLQ PKPQSLSLSL SSNNITQSKP  180
YVSHFEEGTS STDEFRSMKH MKPSIISRDC GKSHQDLVVG IIPNSKSPAS TSYGNLGPLG  240
PFTGYATILK SSRFLKVAQN LLDGICSPKL VTACDVSETE VASKGSNYSC SSSSMFHSAD  300
WGNRSSLGVS LRPDYQQNKA KLMFMQEEVN KRYKQYHQQM QMVFSSFESV AGLNSATPYI  360
DLALKTVSKH FKCLNNAISN QLNHISEVLR NDLSIPTTTN STKLVDTNNV ASLRCMDQSL  420
QKNKPETVPS GFHDPQQHVW RPQRGFPERA VAILRAWLFE HFLHPYPTDT DKHLLATQTG  480
LSRNQVSNWF INARVRVWKP MVEEVHMLDK KTADASENSS LNERTYGTEV GTCSQPRMDK  540
ALNKFVMHSI PENQIQCIDT NAEENELNEA EQWSREKRYK LECGMSSRMD GTLMDFLPYR  600
HSGHDVVRSL GLDLFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A3e-16446504563Homeobox protein Meis2
4xrm_B3e-16446504563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g095050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027343378.10.0BEL1-like homeodomain protein 9
TrEMBLA0A072VC890.0A0A072VC89_MEDTR; Associated with HOX protein
STRINGGLYMA13G39901.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34813257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.18e-81BEL1-like homeodomain 8
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]