PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g095050.1 | ||||||||
Common Name | MTR_2g095050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | TALE | ||||||||
Protein Properties | Length: 617aa MW: 69513.9 Da PI: 7.1631 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.4 | 2.9e-09 | 459 | 496 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ +qV++WF N R + Medtr2g095050.1 459 FEHflHPYPTDTDKHLLATQTGLSRNQVSNWFINARVR 496 665559******************************87 PP | |||||||
2 | BELL | 106.6 | 1.6e-34 | 314 | 382 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 + q+ kakL+ ++eeV+krYkqy++q+q+v ssFe vagl+sa+pY+ lAlk++S+hF+cL +ai++q+ Medtr2g095050.1 314 DYQQNKAKLMFMQEEVNKRYKQYHQQMQMVFSSFESVAGLNSATPYIDLALKTVSKHFKCLNNAISNQL 382 67999*************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.7E-43 | 243 | 380 | IPR006563 | POX domain |
Pfam | PF07526 | 3.6E-38 | 248 | 379 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.115 | 437 | 500 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.1E-9 | 440 | 504 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.75E-12 | 440 | 501 | No hit | No description |
SuperFamily | SSF46689 | 5.56E-17 | 441 | 505 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-27 | 443 | 504 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.6E-17 | 457 | 496 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0048645 | Biological Process | organ formation | ||||
GO:0080006 | Biological Process | internode patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 617 aa Download sequence Send to blast |
MQDLVQVRNI RNANYKLDEP VYSSTEMLNF LTTTTSNPLE YQELGAASEP SRLMMQHYHQ 60 QHYGSLPHSE LSDFGNWRNS VPAPHQLTDQ YWLLNNANNS LSYVYGAEKQ LGLMHQNQNN 120 SLQDVVKSIT SNRSDSEMAS LMHHNGQGIC VGNASELQLQ PKPQSLSLSL SSNNITQSKP 180 YVSHFEEGTS STDEFRSMKH MKPSIISRDC GKSHQDLVVG IIPNSKSPAS TSYGNLGPLG 240 PFTGYATILK SSRFLKVAQN LLDGICSPKL VTACDVSETE VASKGSNYSC SSSSMFHSAD 300 WGNRSSLGVS LRPDYQQNKA KLMFMQEEVN KRYKQYHQQM QMVFSSFESV AGLNSATPYI 360 DLALKTVSKH FKCLNNAISN QLNHISEVLR NDLSIPTTTN STKLVDTNNV ASLRCMDQSL 420 QKNKPETVPS GFHDPQQHVW RPQRGFPERA VAILRAWLFE HFLHPYPTDT DKHLLATQTG 480 LSRNQVSNWF INARVRVWKP MVEEVHMLDK KTADASENSS LNERTYGTEV GTCSQPRMDK 540 ALNKFVMHSI PENQIQCIDT NAEENELNEA EQWSREKRYK LECGMSSRMD GTLMDFLPYR 600 HSGHDVVRSL GLDLFH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 3e-16 | 446 | 504 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 3e-16 | 446 | 504 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g095050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027343378.1 | 0.0 | BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A072VC89 | 0.0 | A0A072VC89_MEDTR; Associated with HOX protein | ||||
STRING | GLYMA13G39901.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3481 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27990.1 | 8e-81 | BEL1-like homeodomain 8 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g095050.1 |
Entrez Gene | 25487833 |
Publications ? help Back to Top | |||
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