PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g094730.1 | ||||||||
Common Name | MTR_2g094730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 166aa MW: 18887.1 Da PI: 6.0852 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 53.7 | 5.9e-17 | 2 | 100 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCa.kdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C+ ++ +C+ ++C++ pyf +++ +++n+h +FG +n+ ++ ++++++ r+++++sl++eA+ ++ P G++gv ++ + +++l++ Medtr2g094730.1 2 PCSCFRIRSVRCEgQNCPYYPYFQNDE--EYRNIHTVFGYRNIRRVFFSTDNHDrRQELVDSLAWEARNKMLYPFTGSYGVQRETEALVATLQN 93 6888899999**8467******98776..9********************9998789************************9999988888888 PP DUF260 93 elallke 99 ++a+l++ Medtr2g094730.1 94 QIATLEA 100 8887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 11.846 | 1 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.5E-15 | 2 | 99 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MPCSCFRIRS VRCEGQNCPY YPYFQNDEEY RNIHTVFGYR NIRRVFFSTD NHDRRQELVD 60 SLAWEARNKM LYPFTGSYGV QRETEALVAT LQNQIATLEA DLANAQNSGA ANLNLNLNLN 120 LNPHQMPQIP NPNPPQVPQM HNFLGLPNVN ADVNDVVNQN PPQVP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g094730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013465304.1 | 1e-119 | LOB domain-containing protein 30 | ||||
TrEMBL | A0A072VBF7 | 1e-118 | A0A072VBF7_MEDTR; DUF260 family protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16530.1 | 8e-11 | ASYMMETRIC LEAVES 2-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g094730.1 |
Entrez Gene | 25487811 |
Publications ? help Back to Top | |||
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