PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g093740.7 | ||||||||
Common Name | MTR_2g093740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ARF | ||||||||
Protein Properties | Length: 681aa MW: 76193 Da PI: 8.095 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.7 | 2.2e-23 | 38 | 139 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + + Medtr2g093740.7 38 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVGWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGE 128 99****************************963.3445679************************************************..449 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+++++r+ Medtr2g093740.7 129 NGELRLGIRRA 139 9999****996 PP | |||||||
2 | Auxin_resp | 119.7 | 2.3e-39 | 164 | 246 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 +a+a+s ks+F+v+Y+Pras+++Fvv+++k+ k+++++v++G+Rfkm+fe+++s+err+ sG+v+g+sdldp++Wp+SkWr+L Medtr2g093740.7 164 VANAISAKSMFHVFYSPRASHADFVVPYQKYAKSIRNPVTIGTRFKMKFEMDESPERRCsSGIVTGMSDLDPYKWPKSKWRCL 246 689********************************************************9**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.09E-43 | 34 | 148 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-39 | 35 | 150 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.78E-21 | 36 | 138 | No hit | No description |
SMART | SM01019 | 8.9E-23 | 38 | 140 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-21 | 38 | 139 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.943 | 38 | 140 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.6E-33 | 164 | 246 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 22.209 | 552 | 636 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.14E-10 | 555 | 631 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 681 aa Download sequence Send to blast |
MCCIQLAGMC LDDKEPEGLE ADDEGNGRSP TKLASHMFCK TLTASDTSTH GGFSVPRRAA 60 EDCFPPLDYK QQRPSQELVA KDLHGVGWKF RHIYRGQPRR HLLTTGWSIF VSQKNLVSGD 120 AVLFLRGENG ELRLGIRRAA RPRNGLPESI IGNQSCSPSF LSSVANAISA KSMFHVFYSP 180 RASHADFVVP YQKYAKSIRN PVTIGTRFKM KFEMDESPER RCSSGIVTGM SDLDPYKWPK 240 SKWRCLMVRW DEDIGANHQD RVSPWEIDPS TSLPPLNIQS SRRLKKLRTG LHVESPSHFI 300 TAGDSGFMDF DESIRSSKVL QGQEKTSFMS LYYGCDTVTK QKEFDINSLR HTNLASNGAR 360 KITSSEFTRI QPSSYADFTE MNRFPRVLQA QEIYPLRSLT GKVDLNLNSW GKTNVSYTKY 420 NLHNATKLNF HSLGSEVLQN SSFPYGDIHK VGQGSSMLCS KPTNFQLGNV SFNTPSSQIG 480 ALRNEVGLSS FKIRNEQKLQ NDISAATSLD ANIRISNDEN FKEMVNPCKL FGFSLSAAAE 540 TTSQNLQNSA KRSCTKVHKQ GSLVGRAIDL SRLSSYNDLV SELERLFGME GLLRDPDKGW 600 RILYTDSEND IMVVGDDPWH EFCDMVSKIH IYTQEEVEKM TIGMMNDDNQ SCLEQTPLIM 660 EASKSSSVGQ PDSSTTVVRI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 3e-88 | 11 | 272 | 101 | 357 | Auxin response factor 1 |
4ldy_B | 3e-88 | 11 | 272 | 101 | 357 | Auxin response factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g093740.7 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC150891 | 0.0 | AC150891.3 Medicago truncatula chromosome 2 clone mth2-76a9, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003597191.2 | 0.0 | auxin response factor 4 isoform X2 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A072VC13 | 0.0 | A0A072VC13_MEDTR; Auxin response factor | ||||
STRING | AES67442 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g093740.7 |
Entrez Gene | 11416074 |