PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr2g093220.1

Common Name

MTR_2g093220

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

Dof

Protein Properties

Length: 294aa MW: 32494.7 Da PI: 7.6397

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr2g093220.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.6e-40	36	96	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+al+cprC+stntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rknk+ss Medtr2g093220.1 36 PEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSS 96 7899******************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.4E-33	38	94	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-26	39	94	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.478	40	94	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	42	78	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MDPSCGQPQQ MSSQSSMENM LGCSKEEQER KPKPQPEQAL NCPRCNSTNT KFCYYNNYSL 60 TQPRYFCKSC RRYWTKGGTL RNVPVGGGCR KNKRSSPSSS SSSKRVQDQT FAPNLNPFNN 120 LPHSSYDHNS NDFALALARL QKQSCGQMGY DDHDVSNLGN SGMNNHSAIN HGFMDAIRSG 180 LFLGNGLHYN NNVQNMYGVY GNGDNGEVNS GNNANNNACG VSEEMMFPYD QEINNVKQEM 240 CSGREQISES KVFGGFPWQL NGGSNIGEVE SARPSWNNGF TSPWQGLLHS PLM*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.10129	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr2g093220.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT138411	0.0	BT138411.1 Medicago truncatula clone JCVI-FLMt-14J10 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003597150.1	0.0	dof zinc finger protein DOF2.1
TrEMBL	G7IU51	0.0	G7IU51_MEDTR; Dof domain zinc finger protein
STRING	AES67401	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5026	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	9e-41	Dof family protein

Link Out ? help Back to Top
Phytozome	Medtr2g093220.1
Entrez Gene	11416064

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]