PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr2g092960.1

Common Name

MTR_2g092960

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

Trihelix

Protein Properties

Length: 1224aa MW: 140856 Da PI: 8.5403

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr2g092960.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	33.6	1e-10	46	134	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf....erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++ + +Li+a ++ ++l+r+ l++ +W+e++k + ++g+ +r+ + Ck+++e l+k+y +k++ +++ + ++ +f++l+ Medtr2g092960.1 46 WSNDATFTLIDAWGKLSKTLNRKYLRQYHWKEIAKTInDHHGYsrkeRRTYVHCKNRFEALKKKYAIEKARVSEN-ELYDDEWLFFEKLD 134 ***********************************8566772222567899*************99997.667778***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.1E-15	44	135	No hit	No description
Pfam	PF03004	3.6E-6	664	804	IPR004252	Probable transposase, Ptta/En/Spm, plant
SuperFamily	SSF54001	5.89E-19	1006	1215	No hit	No description
Pfam	PF02902	3.0E-5	1089	1211	IPR003653	Ulp1 protease family, C-terminal catalytic domain
Gene3D	G3DSA:3.30.310.130	2.1E-6	1089	1172	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006508	Biological Process	proteolysis
GO:0003677	Molecular Function	DNA binding
GO:0008234	Molecular Function	cysteine-type peptidase activity

Sequence ? help Back to Top
Protein Sequence Length: 1224 aa Download sequence Send to blast
MKRIHTANRF EKHKPQEKQT TPPQIMKFVT EAQPSPSSSA VLEDGWSNDA TFTLIDAWGK 60 LSKTLNRKYL RQYHWKEIAK TINDHHGYSR KERRTYVHCK NRFEALKKKY AIEKARVSEN 120 ELYDDEWLFF EKLDSVLGDG LPAKNVSPPV EPTADVPAWA LAPVGRRSGA QNTEKQPVQV 180 RMSSESEEEG SRFRRNVASQ KSLAPMTMTS SPESVEESRS LRSLSAQKRL SPVITTSSLE 240 SAGDLRFRRN LSAFAAAAAA AAEVEVDNSD SYNSDSDDSD FNYEGYDSEV SNESKKRKRG 300 RRDVELGHRE VAGRKDRELG YREVTNAMEK LGEVHERVES SKQRKNVDLE KQKMQKQKMQ 360 FSKDSQKVQF SEGSQRMEFL KDAQTRWMQF LEDQTQRIQS SEGSQRMQFS RDSQTQRVQY 420 PEDSLRMQFS KDSQTQRMQF PEDSQRWRVQ YPKDSPRMQF SKDSQTQRMQ FPEDSQRSRV 480 QYPKDSQTQR MQFPEDSQRM QFSKDSQRMQ QQKTNNSKHM DDVSAPSRSR LDSQSTKKKV 540 RGPTLMKKLA DRADGQRIPI EFDQSTGKSI GENKTKFKSY LGFLGRSKIS ILIEDWDSVD 600 ANVKDEIWTE ILKIWDVPNS GFLRKKWIAY VGERWRAFKT NLTSRYIHGD LRGQSPLEAY 660 NFLDEETWQA FVQMRLDPAF QEIRKKAQMS SAHHTTPHRL SRGGYELLQE KIMQEKLKQK 720 QGSLGDSVAA PPSPPARHEQ WKRARQKPSG DYTSEDSRII AEKIDSLVEK TAQGTFVPQG 780 RKDILAEAIG KPEHSGFVRG VGRGVGIRQY FGPLERDSTP PVFSSEQLRT IKVELTQQIK 840 EELMQDLEAM GFSKKPSNFP THSPNTVVPA STKGSSSDVP PIPEEDEIPE RCELYVDDLL 900 HAVAYGNIYK LGPTIHNQIL ENDMVRVVVS EVLDANAQVP MPTDEVETVG QALNNFVQWP 960 KRLVEIVSDK DVDGYEKDDV SPKRSDPQLD SVQQLVLKAM CMSESIKLEL EHDKMKSLWL 1020 SQRDIMELCM GKQELSITIL RLWLTYLNRL SINVGKSDLY GFIDPCFIQS QHDPSNAEAY 1080 IQNKLCDDKK ECYLAPYYNN RHWQLLIICP KKNNVVFLCS LERKPDKNII QTVDSALDEY 1140 HKLQGVQKKK PTWIVPVCQR QPESYECGYY IMIHMLKIVS DGIIDSWKKI FGNPEPFDED 1200 ELINVRQRCA SLILEFIQGT KNV*

Sequence ? help Back to Top

Protein Sequence Length: 1224 aa Download sequence Send to blast

MKRIHTANRF EKHKPQEKQT TPPQIMKFVT EAQPSPSSSA VLEDGWSNDA TFTLIDAWGK  60
LSKTLNRKYL RQYHWKEIAK TINDHHGYSR KERRTYVHCK NRFEALKKKY AIEKARVSEN  120
ELYDDEWLFF EKLDSVLGDG LPAKNVSPPV EPTADVPAWA LAPVGRRSGA QNTEKQPVQV  180
RMSSESEEEG SRFRRNVASQ KSLAPMTMTS SPESVEESRS LRSLSAQKRL SPVITTSSLE  240
SAGDLRFRRN LSAFAAAAAA AAEVEVDNSD SYNSDSDDSD FNYEGYDSEV SNESKKRKRG  300
RRDVELGHRE VAGRKDRELG YREVTNAMEK LGEVHERVES SKQRKNVDLE KQKMQKQKMQ  360
FSKDSQKVQF SEGSQRMEFL KDAQTRWMQF LEDQTQRIQS SEGSQRMQFS RDSQTQRVQY  420
PEDSLRMQFS KDSQTQRMQF PEDSQRWRVQ YPKDSPRMQF SKDSQTQRMQ FPEDSQRSRV  480
QYPKDSQTQR MQFPEDSQRM QFSKDSQRMQ QQKTNNSKHM DDVSAPSRSR LDSQSTKKKV  540
RGPTLMKKLA DRADGQRIPI EFDQSTGKSI GENKTKFKSY LGFLGRSKIS ILIEDWDSVD  600
ANVKDEIWTE ILKIWDVPNS GFLRKKWIAY VGERWRAFKT NLTSRYIHGD LRGQSPLEAY  660
NFLDEETWQA FVQMRLDPAF QEIRKKAQMS SAHHTTPHRL SRGGYELLQE KIMQEKLKQK  720
QGSLGDSVAA PPSPPARHEQ WKRARQKPSG DYTSEDSRII AEKIDSLVEK TAQGTFVPQG  780
RKDILAEAIG KPEHSGFVRG VGRGVGIRQY FGPLERDSTP PVFSSEQLRT IKVELTQQIK  840
EELMQDLEAM GFSKKPSNFP THSPNTVVPA STKGSSSDVP PIPEEDEIPE RCELYVDDLL  900
HAVAYGNIYK LGPTIHNQIL ENDMVRVVVS EVLDANAQVP MPTDEVETVG QALNNFVQWP  960
KRLVEIVSDK DVDGYEKDDV SPKRSDPQLD SVQQLVLKAM CMSESIKLEL EHDKMKSLWL  1020
SQRDIMELCM GKQELSITIL RLWLTYLNRL SINVGKSDLY GFIDPCFIQS QHDPSNAEAY  1080
IQNKLCDDKK ECYLAPYYNN RHWQLLIICP KKNNVVFLCS LERKPDKNII QTVDSALDEY  1140
HKLQGVQKKK PTWIVPVCQR QPESYECGYY IMIHMLKIVS DGIIDSWKKI FGNPEPFDED  1200
ELINVRQRCA SLILEFIQGT KNV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr2g092960.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024632484.1	0.0	uncharacterized protein LOC11413989 isoform X1
TrEMBL	G7IU29	0.0	G7IU29_MEDTR; Myb/SANT-like DNA-binding domain protein
STRING	AES67379	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF491	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	2e-24	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Medtr2g092960.1
Entrez Gene	11413989

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]