PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g091190.1 | ||||||||
Common Name | MTR_2g091190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 27363.1 Da PI: 7.9764 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44 | 3.8e-14 | 61 | 107 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riNs +++Lr+++P a Kl+Ka+ L +++ ++k+L Medtr2g091190.1 61 KNHSEAERRRRARINSHLDTLRSVIPGA-----NKLDKASLLAEVITHLKEL 107 58*************************8.....6****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.67E-14 | 51 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.247 | 58 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.9E-12 | 61 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-14 | 62 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.7E-13 | 64 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.65E-5 | 71 | 109 | No hit | No description |
SuperFamily | SSF55021 | 8.52E-5 | 146 | 223 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 1.4E-5 | 146 | 189 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MEMDDFASSR INDGCFQGVN GNGYGSSSSL VLDREKGELV EAAVKLERKG VSPERSIEAL 60 KNHSEAERRR RARINSHLDT LRSVIPGANK LDKASLLAEV ITHLKELKTN AAQASEGLVI 120 PKDSDEIRVE SQEGGLNGLP YSIRASLCCE YKPGLLSDIR KALDALHLMI IRAEIATLGG 180 RMKNVFVIIS CKEQNFEDAE YRQFLAGSVH QALRSVLDRF SVSQDILETR KRRRISIFSS 240 SSLGDFL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 229 | 233 | RKRRR |
2 | 230 | 234 | KRRRI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.15867 | 1e-171 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g091190.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013465233.1 | 1e-179 | transcription factor bHLH30 | ||||
TrEMBL | A0A072VCU0 | 1e-178 | A0A072VCU0_MEDTR; Putative transcription factor bHLH family | ||||
STRING | XP_004487166.1 | 1e-142 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10685 | 25 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 2e-33 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g091190.1 |
Entrez Gene | 25487775 |
Publications ? help Back to Top | |||
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