PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr2g090605.1

Common Name

MTR_2g090605

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

C3H

Protein Properties

Length: 416aa MW: 46438.7 Da PI: 8.1556

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr2g090605.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.8	1.9e-08	122	142	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ ++r G C++Gd+C FaHg Medtr2g090605.1 122 VCPEYRR-GGCNRGDTCEFAHG 142 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	2.7E-5	117	143	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.605	118	144	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.8E-5	121	144	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-6	122	142	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.4	152	175	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.287	152	176	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010187	Biological Process	negative regulation of seed germination
GO:0005634	Cellular Component	nucleus
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MTTICAEQHQ QHKFHSSYQP LSPKKSLRDI DIPPRKLLTR RNTTAAVDIF SDDTILQKFL 60 PHNDSDSDSD DPYSSDHFRM YEFKVRRCTR SRSHDWTDCP FAHPGEKARR RDPRRFHYSG 120 TVCPEYRRGG CNRGDTCEFA HGVFECWLHP ARYRTEACKD GKNCKRKVCF FAHTPRQLRI 180 LPVTSSSNEH FSCNKKNNKL LNNHVASKSN NCCLFCHCGG NGNGNGNGAN NSPTSTLFGM 240 SHFSSPPASP PMSPMKPRNG VSSLSRYGSS INSNNLRYRD MLIDLLGSFE GMNFNDGSSS 300 ASSSSPVSVS AAKALQIQNM GYLESLDVPE EQNQQQFIVS PSSSFDHQQH FNILSQSIHQ 360 NLTPSFNDVD NNIINNNMNM FLGNNDNLNK VVGGGDVNGL SCPAPDLGWV NELLM*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MTTICAEQHQ QHKFHSSYQP LSPKKSLRDI DIPPRKLLTR RNTTAAVDIF SDDTILQKFL  60
PHNDSDSDSD DPYSSDHFRM YEFKVRRCTR SRSHDWTDCP FAHPGEKARR RDPRRFHYSG  120
TVCPEYRRGG CNRGDTCEFA HGVFECWLHP ARYRTEACKD GKNCKRKVCF FAHTPRQLRI  180
LPVTSSSNEH FSCNKKNNKL LNNHVASKSN NCCLFCHCGG NGNGNGNGAN NSPTSTLFGM  240
SHFSSPPASP PMSPMKPRNG VSSLSRYGSS INSNNLRYRD MLIDLLGSFE GMNFNDGSSS  300
ASSSSPVSVS AAKALQIQNM GYLESLDVPE EQNQQQFIVS PSSSFDHQQH FNILSQSIHQ  360
NLTPSFNDVD NNIINNNMNM FLGNNDNLNK VVGGGDVNGL SCPAPDLGWV NELLM*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Specifically expressed in seeds. {ECO:0000269\|PubMed:18487351}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269\|PubMed:18487351}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr2g090605.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013465134.1	0.0	zinc finger CCCH domain-containing protein 61
Swissprot	Q9ZWA1	2e-84	C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBL	A0A072VAW2	0.0	A0A072VAW2_MEDTR; Putative transcription factor C3H family
STRING	XP_004487266.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6261	26	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03790.1	1e-71	C3H family protein

Link Out ? help Back to Top
Phytozome	Medtr2g090605.1
Entrez Gene	25487687

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chang G, et al. AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana. Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238 [PMID:29723526]