PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g090305.1 | ||||||||
Common Name | MTR_2g090305 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB_related | ||||||||
Protein Properties | Length: 190aa MW: 21439.9 Da PI: 9.4026 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.6 | 2.5e-12 | 29 | 73 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l+ + ++ +g+W+ I+r k+Rt+ q+ s+ qky Medtr2g090305.1 29 PWTEEEHKLFSVGLQKVDKGDWRGISRNYVKTRTPSQVASHAQKY 73 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 8.0E-6 | 26 | 76 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.34E-14 | 28 | 77 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.6E-14 | 28 | 75 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.8E-8 | 29 | 72 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-9 | 29 | 73 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.272 | 29 | 74 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.19E-8 | 29 | 74 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MFGAEFLRAV FCVPPVLCVF CEFASGLIPW TEEEHKLFSV GLQKVDKGDW RGISRNYVKT 60 RTPSQVASHA QKYFLCRSNR NCCRHRSSLF DITTDRGYFL LAIVRNVNVK TNLFHLKMDS 120 SLKPVATLDD YLANVVPLFG GFLSILGVSE LATWVIDARY GVKLSPLFLV PSNALYFSDT 180 YFYSKKNGK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.4350 | 1e-82 | flower| glandular trichome| leaf| pod| root| seed| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g090305.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT138899 | 7e-80 | BT138899.1 Medicago truncatula clone JCVI-FLMt-13C5 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A072VLS7 | 1e-138 | A0A072VLS7_MEDTR; Myb-like DNA-binding domain, shaqkyf class protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70000.2 | 2e-27 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g090305.1 |
Entrez Gene | 25487647 |
Publications ? help Back to Top | |||
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