PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g089620.1 | ||||||||
Common Name | MTR_2g089620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB | ||||||||
Protein Properties | Length: 327aa MW: 36661.1 Da PI: 6.9164 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.4 | 5.7e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ l+++++ +G+g+W+ ++ g+ R++k+c++rw +yl Medtr2g089620.1 14 KGPWTQEEDLMLINYINTHGPGNWRNLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1.1e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ Medtr2g089620.1 67 RGRFSFEEEESIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-26 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.981 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.27E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.10E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.511 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.38E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MGRTPCCDKS GLKKGPWTQE EDLMLINYIN THGPGNWRNL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEESIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRSG 120 IDPVTHTPRL DHLFDMSSIN ILRSALLGGT NPMNPSFLNL LGGAQAFMNP ELLKLAATAT 180 LLNNNINLGS HNQQQINNAA NGTQQQVQNQ VYNQDQFQIP TQTHNVNNGL LGNMSCSSSA 240 ENTNPCYFGE DLISKQYSEL FHCLNNDGNK NSMGYESVIS TTPLSTTPTP SPTYVNSCTE 300 EERDTYCSDI FKFEIPESTL DINDFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 8e-29 | 12 | 116 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 6e-29 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 6e-29 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in rosette leaves, cauline leaves and flowers. {ECO:0000269|PubMed:8980549}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g089620.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC171168 | 0.0 | AC171168.5 Medicago truncatula chromosome 2 BAC clone mth2-90o6, complete sequence. | |||
GenBank | AC225513 | 0.0 | AC225513.4 Medicago truncatula clone mth2-96m13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003597096.2 | 0.0 | transcription factor MYB41 | ||||
Swissprot | Q9LDR8 | 8e-92 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | A0A0C3V7K6 | 0.0 | A0A0C3V7K6_MEDTR; Myb transcription factor | ||||
STRING | AES60680 | 0.0 | (Medicago truncatula) | ||||
STRING | AES67347 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF850 | 34 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 1e-85 | MYB-like 102 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g089620.1 |
Entrez Gene | 11413979 |
Publications ? help Back to Top | |||
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